Variant report

Variant	rs6754902
Chromosome Location	chr2:39134127-39134128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39132185..39134413-chr2:39174424..39176269,2	MCF-7	breast:
2	chr2:39133216..39135216-chr2:39171193..39172696,2	MCF-7	breast:
3	chr2:39129931..39132831-chr2:39133199..39135082,3	K562	blood:
4	chr2:39130479..39132831-chr2:39133417..39135082,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1010858	0.82[EUR][1000 genomes]
rs1010859	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10181808	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10204999	0.89[EUR][1000 genomes]
rs11124654	0.89[EUR][1000 genomes]
rs1131752	0.80[AMR][1000 genomes]
rs11681583	0.84[AMR][1000 genomes]
rs11689954	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs12621073	0.94[EUR][1000 genomes]
rs12712626	0.81[CHB][hapmap]
rs12712628	0.86[EUR][1000 genomes]
rs13035182	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17422748	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3099940	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs3099941	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs3099942	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs3099945	0.81[CEU][hapmap]
rs3099946	0.84[ASN][1000 genomes]
rs3099955	0.92[ASN][1000 genomes]
rs3099956	1.00[CHB][hapmap]
rs3099957	0.89[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs3099958	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3099959	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3099998	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3112159	0.81[CHB][hapmap]
rs3112163	0.90[CHB][hapmap]
rs384007	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs384421	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs389023	0.84[EUR][1000 genomes]
rs3923144	0.90[CHB][hapmap]
rs434696	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4670266	0.84[CHB][hapmap]
rs4670268	0.96[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4670899	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs6544180	0.97[EUR][1000 genomes]
rs6706091	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs6738069	0.96[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6744514	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7565111	1.00[CHB][hapmap]
rs8179664	0.84[CEU][hapmap];0.92[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9808136	0.81[CEU][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39132000-39136200	Enhancers	HepG2	liver
3	chr2:39132400-39136400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:39132600-39135000	Enhancers	HMEC	breast
5	chr2:39132800-39134400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:39132800-39134400	Enhancers	NHEK	skin
7	chr2:39132800-39134800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:39133800-39134800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:39133800-39135200	Enhancers	GM12878-XiMat	blood
10	chr2:39134000-39137000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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