Variant report

Variant	rs8179664
Chromosome Location	chr2:39138641-39138642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:38977120..38978751-chr2:39137701..39139448,2	K562	blood:

Variant related genes	Relation type
ENSG00000152147	Chromatin interaction
ENSG00000115875	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1010859	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10181808	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10204999	0.82[EUR][1000 genomes]
rs11124655	0.83[EUR][1000 genomes]
rs11681583	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11689954	0.92[CHB][hapmap];0.80[EUR][1000 genomes]
rs12617734	0.83[EUR][1000 genomes]
rs12621073	0.84[EUR][1000 genomes]
rs13035182	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17422748	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2373473	0.80[EUR][1000 genomes]
rs3099945	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs3099946	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3099948	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3099949	0.86[EUR][1000 genomes]
rs3099955	0.92[ASN][1000 genomes]
rs3099956	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3099957	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3099958	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099959	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3112163	0.81[CHB][hapmap]
rs3112170	0.83[EUR][1000 genomes]
rs3112172	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3112175	0.82[ASN][1000 genomes]
rs3112191	0.88[JPT][hapmap]
rs384007	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs384421	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3923144	0.81[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs434696	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4602206	0.89[JPT][hapmap]
rs4670268	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670900	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6544180	0.84[EUR][1000 genomes]
rs6706091	0.85[EUR][1000 genomes]
rs6738069	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6754902	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7565111	0.92[CHB][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39136200-39140200	Weak transcription	HepG2	liver
3	chr2:39137000-39139000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:39138000-39143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:39138400-39139600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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