Variant report

Variant	rs4670268
Chromosome Location	chr2:39150625-39150626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39106547..39110069-chr2:39150032..39154401,3	K562	blood:
2	chr2:38975236..38979856-chr2:39147860..39151897,5	K562	blood:
3	chr2:39106402..39108515-chr2:39149048..39151113,2	MCF-7	breast:
4	chr2:39145069..39147790-chr2:39148985..39151142,2	MCF-7	breast:
5	chr2:39142232..39144316-chr2:39150087..39151609,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214694	Chromatin interaction
ENSG00000115875	Chromatin interaction
ENSG00000152147	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1010859	0.84[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10181808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10204999	0.97[EUR][1000 genomes]
rs10865143	0.86[JPT][hapmap]
rs11124654	0.83[EUR][1000 genomes]
rs1131752	0.82[EUR][1000 genomes]
rs11681583	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11689954	0.84[CEU][hapmap];0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs12621073	0.89[EUR][1000 genomes]
rs12712628	0.83[EUR][1000 genomes]
rs13035182	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17422748	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979143	0.86[JPT][hapmap]
rs3099940	0.83[EUR][1000 genomes]
rs3099941	0.83[EUR][1000 genomes]
rs3099942	0.81[EUR][1000 genomes]
rs3099946	0.83[ASN][1000 genomes]
rs3099956	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs3099957	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs3099958	0.88[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3099959	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3099968	0.86[JPT][hapmap]
rs3099990	0.86[JPT][hapmap]
rs3099998	0.83[EUR][1000 genomes]
rs3100000	0.86[JPT][hapmap]
rs3112163	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs3112175	0.86[ASN][1000 genomes]
rs3112184	0.86[JPT][hapmap]
rs3112188	0.86[JPT][hapmap]
rs3112189	0.86[JPT][hapmap]
rs3112191	1.00[JPT][hapmap]
rs3112192	0.86[JPT][hapmap]
rs3112196	0.86[JPT][hapmap]
rs3134637	0.86[JPT][hapmap]
rs373300	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs384007	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs384421	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs389023	0.92[EUR][1000 genomes]
rs434696	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4602206	0.86[JPT][hapmap]
rs4670266	0.80[CHB][hapmap]
rs4670899	0.83[EUR][1000 genomes]
rs6544180	0.88[EUR][1000 genomes]
rs6706091	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs6738069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6744514	0.83[EUR][1000 genomes]
rs6754902	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7565111	0.80[CHB][hapmap]
rs8179664	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9808136	0.83[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39143000-39151000	Weak transcription	Brain Angular Gyrus	brain
3	chr2:39143800-39164600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:39145800-39172800	Weak transcription	Lung	lung
5	chr2:39147000-39166600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:39149000-39164800	Weak transcription	Ovary	ovary
7	chr2:39150000-39186600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:39150200-39150800	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr2:39150400-39153000	Weak transcription	HepG2	liver
10	chr2:39150400-39184800	Weak transcription	Psoas Muscle	Psoas

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