Variant report

Variant	rs17422748
Chromosome Location	chr2:39130333-39130334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39129931..39132831-chr2:39133199..39135082,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1010858	0.84[EUR][1000 genomes]
rs1010859	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10181808	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10204999	0.86[EUR][1000 genomes]
rs10865143	1.00[JPT][hapmap]
rs11124646	0.88[JPT][hapmap]
rs11124654	0.92[EUR][1000 genomes]
rs11681583	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11689954	0.96[CEU][hapmap];0.92[CHB][hapmap];0.91[EUR][1000 genomes]
rs11694383	0.88[JPT][hapmap]
rs11898812	1.00[JPT][hapmap]
rs12621073	0.87[EUR][1000 genomes]
rs12712626	0.91[CHB][hapmap]
rs12712628	0.88[EUR][1000 genomes]
rs13035182	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529625	0.88[JPT][hapmap]
rs1979143	1.00[JPT][hapmap]
rs2272445	0.88[JPT][hapmap]
rs2373473	0.88[JPT][hapmap]
rs3097713	0.88[JPT][hapmap]
rs3097714	0.88[JPT][hapmap]
rs3099940	0.88[JPT][hapmap]
rs3099941	0.88[JPT][hapmap]
rs3099943	0.88[JPT][hapmap]
rs3099945	0.88[JPT][hapmap]
rs3099946	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3099955	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3099956	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3099957	0.83[CEU][hapmap]
rs3099958	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3099959	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3099968	1.00[JPT][hapmap]
rs3099990	1.00[JPT][hapmap]
rs3099995	0.81[AFR][1000 genomes]
rs3100000	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs3112159	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3112163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs3112166	0.87[AFR][1000 genomes]
rs3112175	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3112178	0.88[JPT][hapmap]
rs3112184	1.00[JPT][hapmap]
rs3112188	1.00[JPT][hapmap]
rs3112189	1.00[JPT][hapmap]
rs3112191	1.00[JPT][hapmap]
rs3112192	1.00[JPT][hapmap]
rs3112196	1.00[JPT][hapmap]
rs3112200	0.88[JPT][hapmap]
rs3112215	0.88[JPT][hapmap]
rs3134637	1.00[JPT][hapmap]
rs3731838	0.88[JPT][hapmap]
rs373300	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs384007	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs384421	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs389023	0.82[EUR][1000 genomes]
rs3923144	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs434696	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4602206	0.88[JPT][hapmap]
rs4670266	0.92[CHB][hapmap]
rs4670268	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670899	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs4670900	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6544180	0.89[EUR][1000 genomes]
rs6706091	0.86[EUR][1000 genomes]
rs6715866	0.88[JPT][hapmap]
rs6717670	1.00[JPT][hapmap]
rs6728394	0.88[JPT][hapmap]
rs6738069	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6744514	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs6746818	0.88[JPT][hapmap]
rs6754902	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6756847	0.88[JPT][hapmap]
rs7419838	0.88[JPT][hapmap]
rs7565111	0.92[CHB][hapmap]
rs7603676	0.88[JPT][hapmap]
rs8179664	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9808136	0.87[CEU][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39120800-39132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:39126800-39134000	Weak transcription	Aorta	Aorta

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