Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1010859	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11681583	0.91[AFR][1000 genomes]
rs13035182	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17422748	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1901289	0.89[EUR][1000 genomes]
rs3099946	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3099956	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3099957	0.82[ASN][1000 genomes]
rs3099958	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3099995	0.81[AMR][1000 genomes]
rs3100000	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3112159	0.81[AMR][1000 genomes]
rs3112163	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3112166	0.87[AFR][1000 genomes]
rs3112175	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs384007	0.80[ASN][1000 genomes]
rs384421	0.80[ASN][1000 genomes]
rs434696	0.82[ASN][1000 genomes]
rs4670900	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61736780	0.81[AFR][1000 genomes]
rs6754902	0.92[ASN][1000 genomes]
rs7565111	0.87[EUR][1000 genomes]
rs7586929	0.84[EUR][1000 genomes]
rs8179664	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3099955	DHX57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39103800-39120200	Weak transcription	Left Ventricle	heart
2	chr2:39104200-39119400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:39104200-39122200	Weak transcription	Ovary	ovary
4	chr2:39104200-39129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:39110400-39120600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:39113600-39118800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: