Variant report

Variant	rs72797402
Chromosome Location	chr2:39112096-39112097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1010859	0.81[AFR][1000 genomes]
rs11888352	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373467	0.92[EUR][1000 genomes]
rs2373469	0.94[AFR][1000 genomes]
rs2373471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3099951	0.92[EUR][1000 genomes]
rs3099958	0.82[AFR][1000 genomes]
rs3100000	0.85[AFR][1000 genomes]
rs3112163	0.87[AFR][1000 genomes]
rs3112166	0.84[AFR][1000 genomes]
rs3112175	0.83[AFR][1000 genomes]
rs4670900	0.86[AFR][1000 genomes]
rs61736780	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736353	0.94[AFR][1000 genomes]
rs72797369	0.87[AFR][1000 genomes]
rs72797376	0.97[AFR][1000 genomes]
rs72797386	0.96[AFR][1000 genomes]
rs72797389	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72797392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72797401	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39103800-39113400	Weak transcription	Pancreas	Pancrea
2	chr2:39103800-39113400	Weak transcription	HSMMtube	muscle
3	chr2:39103800-39114000	Weak transcription	Lung	lung
4	chr2:39103800-39120200	Weak transcription	Left Ventricle	heart
5	chr2:39104000-39112600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:39104000-39112600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:39104000-39113200	Weak transcription	Right Ventricle	heart
8	chr2:39104000-39113400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:39104000-39114200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr2:39104200-39112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:39104200-39112400	Weak transcription	Fetal Intestine Small	intestine
12	chr2:39104200-39112600	Weak transcription	Brain Angular Gyrus	brain
13	chr2:39104200-39112800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:39104200-39113400	Weak transcription	Fetal Intestine Large	intestine
15	chr2:39104200-39113400	Weak transcription	Psoas Muscle	Psoas
16	chr2:39104200-39113400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:39104200-39113800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:39104200-39113800	Weak transcription	Fetal Lung	lung
19	chr2:39104200-39114400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:39104200-39114400	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:39104200-39114800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:39104200-39114800	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:39104200-39115800	Weak transcription	Brain Germinal Matrix	brain
24	chr2:39104200-39119400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:39104200-39122200	Weak transcription	Ovary	ovary
26	chr2:39104200-39129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:39107000-39113600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:39108400-39113600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:39108400-39113800	Weak transcription	Brain Anterior Caudate	brain
30	chr2:39108800-39114600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr2:39110400-39115800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:39110400-39120600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:39111000-39112600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:39112000-39112200	Enhancers	Fetal Muscle Leg	muscle
36	chr2:39112000-39113600	Weak transcription	Fetal Stomach	stomach

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