Variant report

Variant	rs4265996
Chromosome Location	chr2:39143353-39143354
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39142232..39144316-chr2:39150087..39151609,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10173240	0.86[JPT][hapmap]
rs10204999	0.86[ASN][1000 genomes]
rs10779923	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11124651	0.86[AMR][1000 genomes]
rs11124655	0.83[ASN][1000 genomes]
rs11675110	0.89[AMR][1000 genomes]
rs11689954	0.81[JPT][hapmap]
rs12373604	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12465365	0.89[AMR][1000 genomes]
rs12617734	0.82[ASN][1000 genomes]
rs12621073	0.81[ASN][1000 genomes]
rs12623330	0.81[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes]
rs12712621	0.93[JPT][hapmap]
rs12712625	0.81[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap]
rs12712626	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12712627	0.81[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes]
rs13029388	0.82[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes]
rs13029406	0.86[JPT][hapmap]
rs13383541	0.87[JPT][hapmap]
rs1530852	0.86[JPT][hapmap]
rs1530853	0.86[JPT][hapmap]
rs17494315	0.85[AMR][1000 genomes]
rs1868867	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1901289	0.85[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1979142	0.86[JPT][hapmap]
rs2060743	0.84[CHB][hapmap]
rs3099959	0.89[CHB][hapmap]
rs373300	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[ASN][1000 genomes]
rs3770681	0.86[JPT][hapmap]
rs389023	0.88[ASN][1000 genomes]
rs390008	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4641916	0.89[AMR][1000 genomes]
rs4670266	0.81[AMR][1000 genomes]
rs4670267	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4670899	0.83[CHB][hapmap]
rs6544180	0.80[ASN][1000 genomes]
rs6706091	0.84[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.89[ASN][1000 genomes]
rs6706186	0.99[ASN][1000 genomes]
rs6710418	0.87[AMR][1000 genomes]
rs6734584	0.86[AMR][1000 genomes]
rs6738403	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6741088	0.85[AMR][1000 genomes]
rs6744514	0.84[CHB][hapmap];0.86[YRI][hapmap]
rs7419616	0.86[JPT][hapmap]
rs7565111	0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs7586929	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7589162	0.87[JPT][hapmap];0.80[YRI][hapmap]
rs7598922	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9808136	0.84[CHB][hapmap];0.80[JPT][hapmap];0.84[YRI][hapmap]
rs986019	0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39139600-39150000	Weak transcription	Psoas Muscle	Psoas
3	chr2:39142000-39150000	Weak transcription	Right Ventricle	heart
4	chr2:39143000-39143800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:39143000-39151000	Weak transcription	Brain Angular Gyrus	brain

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