Variant report

Variant	rs6755058
Chromosome Location	chr2:184805750-184805751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10199461	0.89[EUR][1000 genomes]
rs2119045	1.00[ASN][1000 genomes]
rs4296393	0.80[EUR][1000 genomes]
rs4303682	0.80[EUR][1000 genomes]
rs4322806	0.80[EUR][1000 genomes]
rs4350706	0.89[EUR][1000 genomes]
rs4458173	0.89[EUR][1000 genomes]
rs4505484	0.80[EUR][1000 genomes]
rs4597475	0.89[EUR][1000 genomes]
rs4666952	0.80[EUR][1000 genomes]
rs6714564	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743413	0.80[EUR][1000 genomes]
rs704864	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826126	1.00[ASN][1000 genomes]
rs826128	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826129	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826146	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763332	chr2:184789460-184815561	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1006250	chr2:184793800-184808782	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	n/a
5	nsv583958	chr2:184793851-184808873	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	n/a
6	nsv437602	chr2:184794400-184806525	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
7	nsv1004839	chr2:184794400-184811658	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
8	nsv583966	chr2:184797402-184808873	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
9	nsv583967	chr2:184797402-184814661	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv522576	chr2:184797402-184826437	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv583973	chr2:184797826-184808873	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
12	nsv583982	chr2:184798313-184808873	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184793000-184809000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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