Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr2:184816149-184816791	MCF-7	breast:	n/a	chr2:184816591-184816601
2	CEBPB	chr2:184816162-184816899	Hela-S3	cervix:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538

Variant related genes	Relation type
ENSG00000238306	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10199461	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205814	0.88[ASN][1000 genomes]
rs34942554	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34974614	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296393	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4303682	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4322806	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4350706	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505484	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4560074	0.94[ASN][1000 genomes]
rs4597475	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666646	0.84[EUR][1000 genomes]
rs4666952	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6714564	0.80[EUR][1000 genomes]
rs6743413	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6755058	0.89[EUR][1000 genomes]
rs704864	0.82[EUR][1000 genomes]
rs7601296	0.83[ASN][1000 genomes]
rs826128	0.82[EUR][1000 genomes]
rs826129	0.84[EUR][1000 genomes]
rs826146	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv522576	chr2:184797402-184826437	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184814800-184816200	Enhancers	Fetal Muscle Leg	muscle
2	chr2:184815000-184816400	Enhancers	Fetal Stomach	stomach
3	chr2:184815400-184816200	Enhancers	Esophagus	oesophagus
4	chr2:184815400-184817000	Enhancers	Hela-S3	cervix
5	chr2:184816000-184816400	Weak transcription	Fetal Lung	lung

Quick Search: