Variant report

Variant	rs4666646
Chromosome Location	chr2:184865701-184865702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10199461	0.84[EUR][1000 genomes]
rs4296393	0.93[EUR][1000 genomes]
rs4303682	0.93[EUR][1000 genomes]
rs4322806	0.93[EUR][1000 genomes]
rs4350706	0.84[EUR][1000 genomes]
rs4458173	0.84[EUR][1000 genomes]
rs4505484	0.93[EUR][1000 genomes]
rs4597475	0.84[EUR][1000 genomes]
rs4616440	0.95[EUR][1000 genomes]
rs4666649	0.95[EUR][1000 genomes]
rs4666952	0.93[EUR][1000 genomes]
rs6743413	0.93[EUR][1000 genomes]
rs7595699	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997475	chr2:184828307-184993186	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1013671	chr2:184830707-184882606	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1012023	chr2:184846782-184890545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv583991	chr2:184855828-184954425	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv459975	chr2:184863746-184901392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv583992	chr2:184863746-184901392	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184863800-184870600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:184863800-184870600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:184863800-184872000	Weak transcription	Pancreas	Pancrea
4	chr2:184864000-184869200	Weak transcription	Hela-S3	cervix
5	chr2:184864400-184869800	Weak transcription	Fetal Intestine Small	intestine
6	chr2:184865000-184869200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:184865200-184869000	Weak transcription	GM12878-XiMat	blood
8	chr2:184865200-184869200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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