Variant report

Variant	rs4616440
Chromosome Location	chr2:184896721-184896722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10199461	1.00[CEU][hapmap]
rs4296393	0.89[EUR][1000 genomes]
rs4303682	0.89[EUR][1000 genomes]
rs4322806	0.89[EUR][1000 genomes]
rs4458173	1.00[CEU][hapmap]
rs4505484	0.89[EUR][1000 genomes]
rs4597475	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4666646	0.95[EUR][1000 genomes]
rs4666649	1.00[EUR][1000 genomes]
rs4666952	0.89[EUR][1000 genomes]
rs6743413	0.89[EUR][1000 genomes]
rs7595699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997475	chr2:184828307-184993186	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv583991	chr2:184855828-184954425	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv459975	chr2:184863746-184901392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv583992	chr2:184863746-184901392	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184883800-184911600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184895000-184897000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:184895200-184896800	Enhancers	Fetal Heart	heart
4	chr2:184895800-184896800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:184895800-184896800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:184895800-184897000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:184895800-184897000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:184896000-184897000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:184896200-184897000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:184896200-184897000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:184896400-184896800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:184896400-184896800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:184896600-184896800	Enhancers	GM12878-XiMat	blood
14	chr2:184896600-184898000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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