Variant report

Variant	rs10199461
Chromosome Location	chr2:184816518-184816519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr2:184816362-184816764	MCF10A-Er-Src	breast:	n/a	chr2:184816674-184816684 chr2:184816674-184816684
2	GATA3	chr2:184816149-184816791	MCF-7	breast:	n/a	chr2:184816591-184816601
3	FOS	chr2:184816362-184816769	MCF10A-Er-Src	breast:	n/a	chr2:184816674-184816684 chr2:184816674-184816684
4	MYC	chr2:184816491-184816662	Hela-S3	cervix:	n/a	n/a
5	SIN3AK20	chr2:184816186-184816863	MCF-7	breast:	n/a	n/a
6	CEBPB	chr2:184816162-184816899	Hela-S3	cervix:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
7	ZNF217	chr2:184816324-184816653	MCF-7	breast:	n/a	n/a
8	GATA3	chr2:184816220-184816886	MCF-7	breast:	n/a	chr2:184816591-184816601
9	CEBPB	chr2:184816327-184816729	A549	lung:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
10	CEBPB	chr2:184816251-184816771	A549	lung:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
11	STAT3	chr2:184816434-184816634	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr2:184816207-184816835	MCF-7	breast:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
13	MYC	chr2:184816344-184816755	MCF10A-Er-Src	breast:	n/a	n/a
14	CEBPB	chr2:184816355-184816727	HepG2	liver:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
15	CEBPB	chr2:184816313-184816651	ECC-1	luminal epithelium:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
16	FOS	chr2:184816374-184816723	MCF10A-Er-Src	breast:	n/a	chr2:184816674-184816684 chr2:184816674-184816684
17	CEBPB	chr2:184816300-184816839	MCF-7	breast:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
18	CEBPB	chr2:184816357-184816719	ECC-1	luminal epithelium:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
19	STAT3	chr2:184816361-184816676	MCF10A-Er-Src	breast:	n/a	n/a
20	SIN3AK20	chr2:184816323-184816865	MCF-7	breast:	n/a	n/a
21	MYC	chr2:184816314-184816724	MCF10A-Er-Src	breast:	n/a	n/a
22	GATA3	chr2:184816230-184816852	MCF-7	breast:	n/a	chr2:184816591-184816601
23	STAT3	chr2:184816407-184816660	MCF10A-Er-Src	breast:	n/a	n/a
24	CEBPB	chr2:184816397-184816637	K562	blood:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
25	CEBPB	chr2:184816389-184816686	H1-hESC	embryonic stem cell:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
26	TCF7L2	chr2:184816319-184816624	MCF-7	breast:	n/a	n/a
27	CEBPB	chr2:184816387-184816712	A549	lung:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538
28	GATA3	chr2:184816351-184816655	MCF-7	breast:	n/a	chr2:184816591-184816601
29	E2F4	chr2:184816284-184816578	MCF10A-Er-Src	breast:	n/a	n/a
30	FOS	chr2:184816345-184816745	MCF10A-Er-Src	breast:	n/a	chr2:184816674-184816684 chr2:184816674-184816684
31	POLR2A	chr2:184816417-184816773	MCF10A-Er-Src	breast:	n/a	n/a
32	CEBPB	chr2:184816373-184816719	IMR90	lung:	n/a	chr2:184816529-184816538 chr2:184816527-184816540 chr2:184816529-184816538 chr2:184816529-184816538

Variant related genes	Relation type
ENSG00000238306	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10205814	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs34942554	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34974614	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296393	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4303682	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4322806	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4350706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458173	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505484	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4560074	0.94[ASN][1000 genomes]
rs4597475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666646	0.84[EUR][1000 genomes]
rs4666952	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6714564	0.80[EUR][1000 genomes]
rs6743413	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6755058	0.89[EUR][1000 genomes]
rs704864	0.82[EUR][1000 genomes]
rs7601296	0.83[ASN][1000 genomes]
rs826128	0.82[EUR][1000 genomes]
rs826129	0.84[EUR][1000 genomes]
rs826146	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv522576	chr2:184797402-184826437	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184815400-184817000	Enhancers	Hela-S3	cervix
2	chr2:184816400-184817000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:184816400-184817800	Enhancers	Fetal Lung	lung

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