Variant report
| Variant | rs10205814 |
|---|---|
| Chromosome Location | chr2:184818243-184818244 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MYC | chr2:184818131-184818331 | MCF10A-Er-Src | breast: | n/a | chr2:184818289-184818298 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238306 | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10199461 | 1.00[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs34942554 | 0.82[ASN][1000 genomes] |
| rs34974614 | 0.88[ASN][1000 genomes] |
| rs4350706 | 0.88[ASN][1000 genomes] |
| rs4458173 | 0.88[ASN][1000 genomes] |
| rs4560074 | 0.82[ASN][1000 genomes] |
| rs4597475 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes] |
| rs7601296 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002074 | chr2:184697897-184955330 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875487 | chr2:184737282-185186670 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv522576 | chr2:184797402-184826437 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10205814 | FSIP2 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
