Variant report

Variant	rs4560074
Chromosome Location	chr2:184815985-184815986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10199461	0.94[ASN][1000 genomes]
rs10205814	0.82[ASN][1000 genomes]
rs34942554	0.87[ASN][1000 genomes]
rs34974614	0.94[ASN][1000 genomes]
rs4350706	0.94[ASN][1000 genomes]
rs4458173	0.94[ASN][1000 genomes]
rs4597475	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv522576	chr2:184797402-184826437	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184813200-184816000	Enhancers	Fetal Lung	lung
2	chr2:184814600-184816000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:184814800-184816000	Enhancers	Brain Germinal Matrix	brain
4	chr2:184814800-184816200	Enhancers	Fetal Muscle Leg	muscle
5	chr2:184815000-184816000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:184815000-184816400	Enhancers	Fetal Stomach	stomach
7	chr2:184815400-184816200	Enhancers	Esophagus	oesophagus
8	chr2:184815400-184817000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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