Variant report

Variant	rs6758542
Chromosome Location	chr2:73075301-73075302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73069916..73072800-chr2:73074555..73076958,2	MCF-7	breast:
2	chr2:73069721..73072600-chr2:73074813..73077230,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10211019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1027848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496186	0.83[AMR][1000 genomes]
rs10865393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126385	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1150500	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1161265	0.80[EUR][1000 genomes]
rs1161266	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1161267	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11894160	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12474728	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622275	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12713775	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12989141	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12996406	0.80[AMR][1000 genomes]
rs13035731	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396106	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1567230	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008360	0.84[YRI][hapmap]
rs1995734	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2048170	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048171	0.83[AMR][1000 genomes]
rs2135985	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420880	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420881	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421095	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4321391	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852298	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4852893	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4852902	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546782	0.80[AMR][1000 genomes]
rs6546783	0.83[AMR][1000 genomes]
rs6546786	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546788	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546789	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546790	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546791	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546792	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6730083	0.86[EUR][1000 genomes]
rs6739002	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6750740	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6758431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580268	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7586787	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7588602	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7592155	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs925146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925147	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6758542	CYP26B1	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73069000-73078400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:73073800-73079200	Enhancers	Placenta	Placenta
3	chr2:73074000-73078200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:73075000-73075400	Enhancers	Hela-S3	cervix

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