Variant report

Variant	rs6758858
Chromosome Location	chr2:114642163-114642164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114641822..114644086-chr2:114712983..114714789,2	K562	blood:
2	chr2:114512907..114516219-chr2:114641764..114644786,3	K562	blood:
3	chr2:114511479..114519908-chr2:114641728..114650266,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction

rs_ID	r²[population]
rs10188927	0.88[AFR][1000 genomes]
rs10194262	0.84[AFR][1000 genomes]
rs10195450	0.88[AFR][1000 genomes]
rs10199930	0.88[AFR][1000 genomes]
rs10204719	0.88[AFR][1000 genomes]
rs10864926	0.82[AFR][1000 genomes]
rs12617393	0.93[AFR][1000 genomes]
rs13387748	0.88[AFR][1000 genomes]
rs13393280	0.91[AFR][1000 genomes]
rs13396357	0.84[AFR][1000 genomes]
rs13426411	0.93[AFR][1000 genomes]
rs13429261	0.93[AFR][1000 genomes]
rs13432142	0.93[AFR][1000 genomes]
rs6542179	0.93[AFR][1000 genomes]
rs6706992	0.84[AFR][1000 genomes]
rs6717183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6735673	0.88[AFR][1000 genomes]
rs6741741	0.93[AFR][1000 genomes]
rs6742452	0.88[AFR][1000 genomes]
rs6759040	0.93[AFR][1000 genomes]
rs7561061	0.88[AFR][1000 genomes]
rs7578772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7580260	0.83[AFR][1000 genomes]
rs7581859	0.88[AFR][1000 genomes]
rs7592252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs924805	0.84[AFR][1000 genomes]

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114631400-114644000	Weak transcription	Spleen	Spleen
2	chr2:114633800-114646800	Weak transcription	Aorta	Aorta
3	chr2:114634200-114644800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:114634400-114644200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:114634600-114644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:114634600-114644000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:114634600-114644000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:114634600-114644000	Weak transcription	Pancreas	Pancrea
9	chr2:114634600-114645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:114634600-114646000	Weak transcription	Brain Anterior Caudate	brain
11	chr2:114634600-114646200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:114634800-114644200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:114635000-114644200	Weak transcription	Esophagus	oesophagus
14	chr2:114635400-114646000	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:114635600-114643800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:114635600-114644000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:114635600-114644400	Weak transcription	Fetal Brain Female	brain
18	chr2:114635600-114645800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:114635800-114644000	Weak transcription	Dnd41	blood
20	chr2:114636000-114642200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr2:114636000-114642600	Weak transcription	K562	blood
22	chr2:114636000-114642800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:114636000-114643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:114636000-114643800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:114636000-114644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:114636000-114644000	Weak transcription	Small Intestine	intestine
27	chr2:114636000-114644000	Weak transcription	HUVEC	blood vessel
28	chr2:114636200-114643800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:114636200-114643800	Weak transcription	NH-A	brain
30	chr2:114636200-114643800	Weak transcription	Osteobl	bone
31	chr2:114636200-114644000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr2:114636400-114642400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:114636600-114642600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:114636600-114643000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr2:114636600-114643800	Weak transcription	Fetal Lung	lung
36	chr2:114636600-114644000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:114636800-114642400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr2:114636800-114642400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr2:114636800-114643200	Weak transcription	NHLF	lung
40	chr2:114636800-114643400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:114636800-114643800	Weak transcription	A549	lung
42	chr2:114636800-114643800	Weak transcription	HMEC	breast
43	chr2:114636800-114644200	Weak transcription	Left Ventricle	heart
44	chr2:114636800-114644600	Weak transcription	Fetal Intestine Small	intestine
45	chr2:114636800-114645400	Weak transcription	Fetal Intestine Large	intestine
46	chr2:114637000-114642200	Weak transcription	Fetal Stomach	stomach
47	chr2:114637000-114644000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr2:114637000-114644000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr2:114637000-114644000	Weak transcription	NHDF-Ad	bronchial
50	chr2:114637200-114642200	Weak transcription	Stomach Mucosa	stomach

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