Variant report

Variant	rs13387748
Chromosome Location	chr2:114704667-114704668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr2:114704585-114704796	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr2:114704422-114705334	GM12892	blood:	n/a	n/a
3	POLR2A	chr2:114704661-114705364	GM12892	blood:	n/a	n/a
4	POLR2A	chr2:114704539-114705380	GM12892	blood:	n/a	n/a
5	POLR2A	chr2:114704434-114705439	HepG2	liver:	n/a	n/a
6	POLR2A	chr2:114704436-114705410	GM12878	blood:	n/a	n/a
7	POLR2A	chr2:114704282-114705328	K562	blood:	n/a	n/a

Variant related genes	Relation type
ACTR3	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10173512	0.81[ASN][1000 genomes]
rs10173891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174686	0.87[ASN][1000 genomes]
rs10179207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10194262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10195450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204979	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10208093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123215	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11895582	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11895596	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12615093	0.87[ASN][1000 genomes]
rs12617393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12621090	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13388533	0.87[ASN][1000 genomes]
rs13393280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13394237	0.87[ASN][1000 genomes]
rs13396357	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13426411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13428539	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429261	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13432142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1467292	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504043	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1522915	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17040419	1.00[EUR][1000 genomes]
rs1962501	0.87[ASN][1000 genomes]
rs2047883	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2140262	0.87[ASN][1000 genomes]
rs2177263	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3828257	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4278936	0.85[AMR][1000 genomes]
rs4362566	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4848357	0.87[ASN][1000 genomes]
rs59450025	1.00[EUR][1000 genomes]
rs6542179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6706992	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717183	0.88[AFR][1000 genomes]
rs6724586	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6732402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6741785	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6742452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747278	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758858	0.88[AFR][1000 genomes]
rs6759040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72948681	0.87[ASN][1000 genomes]
rs72948686	0.87[ASN][1000 genomes]
rs7561061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575874	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7578772	0.86[AFR][1000 genomes]
rs7580099	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7580260	0.85[AFR][1000 genomes]
rs7581859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7592252	0.88[AFR][1000 genomes]
rs924804	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9973379	0.87[ASN][1000 genomes]
rs9973578	0.87[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
3	chr2:114668200-114704800	Weak transcription	Gastric	stomach
4	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
5	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
6	chr2:114670800-114719000	Strong transcription	Dnd41	blood
7	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
12	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
13	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:114681600-114719400	Strong transcription	NH-A	brain
17	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:114683000-114715800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
23	chr2:114687000-114718200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr2:114687400-114719400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr2:114687600-114704800	Weak transcription	Aorta	Aorta
26	chr2:114687600-114704800	Weak transcription	Fetal Stomach	stomach
27	chr2:114688200-114715200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:114688400-114719200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:114688600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:114689000-114711000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
31	chr2:114689400-114715200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr2:114689400-114716800	Strong transcription	Placenta	Placenta
33	chr2:114691000-114707000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr2:114691600-114715400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:114691800-114710600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr2:114691800-114716200	Strong transcription	HUVEC	blood vessel
37	chr2:114691800-114719800	Strong transcription	HSMM	muscle
38	chr2:114693000-114716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr2:114693200-114720000	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr2:114695200-114720200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr2:114695400-114715000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:114695600-114705800	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:114695600-114706200	Strong transcription	Primary B cells from cord blood	blood
44	chr2:114696000-114706800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr2:114696000-114716000	Strong transcription	Osteobl	bone
46	chr2:114696000-114720200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:114696400-114704800	Weak transcription	Fetal Intestine Small	intestine
48	chr2:114696400-114705000	Weak transcription	Pancreas	Pancrea
49	chr2:114696400-114705000	Weak transcription	Right Ventricle	heart
50	chr2:114696400-114705600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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