Variant report

Variant	rs17040419
Chromosome Location	chr2:114730384-114730385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114727885..114731158-chr2:114732543..114736928,5	K562	blood:
2	chr2:114725172..114726759-chr2:114728569..114731437,2	K562	blood:
3	chr2:114719759..114724600-chr2:114725495..114731130,7	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10173891	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10179207	1.00[EUR][1000 genomes]
rs10188927	1.00[EUR][1000 genomes]
rs10195450	1.00[EUR][1000 genomes]
rs10199857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10199930	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10204719	1.00[EUR][1000 genomes]
rs10204979	1.00[EUR][1000 genomes]
rs10208093	1.00[EUR][1000 genomes]
rs11123215	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11895582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11895596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12617393	1.00[EUR][1000 genomes]
rs12621090	1.00[EUR][1000 genomes]
rs12996253	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs13387748	1.00[EUR][1000 genomes]
rs13393280	1.00[EUR][1000 genomes]
rs13426411	1.00[EUR][1000 genomes]
rs13428539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs13429261	1.00[EUR][1000 genomes]
rs13432142	1.00[EUR][1000 genomes]
rs1467292	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1504043	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1522915	1.00[EUR][1000 genomes]
rs2047883	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2177263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3828257	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4362566	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4848357	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59450025	1.00[EUR][1000 genomes]
rs6542179	1.00[EUR][1000 genomes]
rs6706992	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6724586	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6732402	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6735673	1.00[EUR][1000 genomes]
rs6741741	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6741785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6742452	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6747278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6759040	1.00[EUR][1000 genomes]
rs7561061	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7575874	1.00[EUR][1000 genomes]
rs7580099	1.00[EUR][1000 genomes]
rs7581859	1.00[EUR][1000 genomes]
rs924804	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
3	chr2:114705200-114731200	Weak transcription	Lung	lung
4	chr2:114705200-114733000	Weak transcription	Pancreas	Pancrea
5	chr2:114705200-114734200	Weak transcription	Right Ventricle	heart
6	chr2:114705200-114736000	Weak transcription	Gastric	stomach
7	chr2:114705200-114737600	Weak transcription	Esophagus	oesophagus
8	chr2:114706200-114731400	Weak transcription	Aorta	Aorta
9	chr2:114706200-114731400	Weak transcription	Spleen	Spleen
10	chr2:114709200-114731200	Weak transcription	Fetal Kidney	kidney
11	chr2:114710400-114735800	Weak transcription	Colonic Mucosa	Colon
12	chr2:114711200-114735400	Weak transcription	Fetal Lung	lung
13	chr2:114711800-114735400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:114713600-114732800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:114713800-114731400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:114713800-114732200	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:114713800-114734600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:114713800-114735200	Weak transcription	Ovary	ovary
19	chr2:114713800-114736200	Weak transcription	Fetal Stomach	stomach
20	chr2:114714400-114735200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:114714800-114732800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:114715000-114744000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr2:114715200-114735600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:114715600-114732800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:114715600-114734800	Weak transcription	Left Ventricle	heart
26	chr2:114715600-114735400	Weak transcription	K562	blood
27	chr2:114715600-114737000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:114718600-114733000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:114718600-114735400	Weak transcription	Adipose Nuclei	Adipose
30	chr2:114718800-114743200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:114719400-114732400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:114721200-114733200	Weak transcription	NHEK	skin
33	chr2:114721200-114735800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:114723400-114731400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:114723600-114732800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:114724200-114735000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:114724200-114735200	Weak transcription	Brain Substantia Nigra	brain
38	chr2:114724400-114731000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr2:114724600-114735000	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:114724800-114731600	Weak transcription	Colon Smooth Muscle	Colon
41	chr2:114724800-114733000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr2:114724800-114734400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:114725000-114732600	Weak transcription	Liver	Liver
44	chr2:114725000-114734200	Strong transcription	HSMM	muscle
45	chr2:114725000-114735000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:114725200-114734000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:114725200-114734200	Weak transcription	HUVEC	blood vessel
48	chr2:114725200-114734400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:114725400-114734000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:114725600-114733400	Strong transcription	NH-A	brain

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