Variant report

Variant	rs1467292
Chromosome Location	chr2:114613353-114613354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114612352..114613856-chr2:114615022..114617998,2	K562	blood:
2	chr2:114613097..114614996-chr2:114615695..114618049,2	MCF-7	breast:
3	chr2:114613082..114614929-chr2:114645672..114648205,3	K562	blood:
4	chr2:114605600..114609887-chr2:114610932..114615249,5	K562	blood:
5	chr2:114613082..114614905-chr2:114645672..114647278,2	K562	blood:

Variant related genes	Relation type
ENSG00000239077	Chromatin interaction
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10173512	0.94[ASN][1000 genomes]
rs10173891	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10174686	1.00[ASN][1000 genomes]
rs10179207	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10188927	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10194262	0.85[AMR][1000 genomes]
rs10195450	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10199857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10199930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10204719	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10204979	1.00[EUR][1000 genomes]
rs10208093	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10864926	0.92[AFR][1000 genomes]
rs11123215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615093	1.00[ASN][1000 genomes]
rs12617393	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12621090	1.00[EUR][1000 genomes]
rs13387748	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13388533	1.00[ASN][1000 genomes]
rs13393280	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394237	1.00[ASN][1000 genomes]
rs13396357	0.87[ASN][1000 genomes]
rs13399326	0.88[ASN][1000 genomes]
rs13426411	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428539	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13429261	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432142	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504043	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1522915	1.00[EUR][1000 genomes]
rs17040419	1.00[EUR][1000 genomes]
rs1962501	1.00[ASN][1000 genomes]
rs2047883	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2140262	1.00[ASN][1000 genomes]
rs2177263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828257	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4278936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4362566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848357	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59450025	1.00[EUR][1000 genomes]
rs6542179	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6706992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6724586	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6732402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6735673	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6741741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6741785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6747278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6759040	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948681	1.00[ASN][1000 genomes]
rs72948686	1.00[ASN][1000 genomes]
rs7561061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7573133	0.88[ASN][1000 genomes]
rs7575874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7580099	1.00[EUR][1000 genomes]
rs7581859	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924804	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924805	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9973379	1.00[ASN][1000 genomes]
rs9973578	1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
2	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:114603800-114616000	Weak transcription	Spleen	Spleen
6	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr2:114605400-114616000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:114606200-114621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:114607000-114616200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:114607200-114615200	Weak transcription	Osteobl	bone
11	chr2:114607200-114615800	Weak transcription	HMEC	breast
12	chr2:114608600-114615200	Weak transcription	Pancreas	Pancrea
13	chr2:114609600-114614600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:114610200-114614400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:114610400-114613400	Enhancers	Primary B cells from cord blood	blood
16	chr2:114611600-114623400	Enhancers	Primary B cells from peripheral blood	blood
17	chr2:114612000-114613400	Strong transcription	Primary T cells from cord blood	blood
18	chr2:114612200-114613600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr2:114612200-114613600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr2:114612400-114613400	Enhancers	GM12878-XiMat	blood
21	chr2:114612600-114615000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:114612800-114626000	Weak transcription	Thymus	Thymus
23	chr2:114613000-114616000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr2:114613200-114613400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr2:114613200-114614600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr2:114613200-114614600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:114613200-114614600	Weak transcription	K562	blood
28	chr2:114613200-114615400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:114613200-114631400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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