Variant report

Variant	rs1962501
Chromosome Location	chr2:114601583-114601584
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114513011..114515179-chr2:114599381..114601639,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10173512	0.94[ASN][1000 genomes]
rs10173891	0.87[ASN][1000 genomes]
rs10174686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179207	0.87[ASN][1000 genomes]
rs10195450	0.87[ASN][1000 genomes]
rs10199857	0.87[ASN][1000 genomes]
rs10199930	0.87[ASN][1000 genomes]
rs10204719	0.87[ASN][1000 genomes]
rs10208093	0.87[ASN][1000 genomes]
rs11123215	1.00[ASN][1000 genomes]
rs11895582	1.00[ASN][1000 genomes]
rs11895596	1.00[ASN][1000 genomes]
rs12615093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387748	0.87[ASN][1000 genomes]
rs13388533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396357	0.87[ASN][1000 genomes]
rs13399326	0.88[ASN][1000 genomes]
rs13428539	0.87[ASN][1000 genomes]
rs1467292	1.00[ASN][1000 genomes]
rs2140262	1.00[ASN][1000 genomes]
rs2177263	1.00[ASN][1000 genomes]
rs4362566	1.00[ASN][1000 genomes]
rs4848357	1.00[ASN][1000 genomes]
rs6706992	0.87[ASN][1000 genomes]
rs6732402	0.87[ASN][1000 genomes]
rs6735673	0.87[ASN][1000 genomes]
rs6741785	1.00[ASN][1000 genomes]
rs6742452	0.87[ASN][1000 genomes]
rs6747278	0.87[ASN][1000 genomes]
rs72948681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561061	0.87[ASN][1000 genomes]
rs7573133	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9973379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
3	chr2:114596600-114603400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr2:114600000-114601800	Enhancers	Placenta	Placenta
8	chr2:114600000-114602600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:114600200-114602000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:114600800-114601600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:114600800-114601600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:114601200-114601600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:114601200-114601600	Weak transcription	Osteobl	bone
14	chr2:114601200-114602000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:114601200-114602200	Enhancers	HMEC	breast
16	chr2:114601200-114606200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:114601200-114606800	Weak transcription	NHLF	lung
18	chr2:114601400-114601600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:114601400-114601800	Enhancers	NHEK	skin
20	chr2:114601400-114602400	Enhancers	NHDF-Ad	bronchial
21	chr2:114601400-114602800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:114601400-114612000	Weak transcription	Primary T cells from cord blood	blood

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