Variant report

Variant	rs9973379
Chromosome Location	chr2:114589119-114589120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:114588627-114589171	K562	blood:	n/a	chr2:114588976-114588991
2	MAX	chr2:114588550-114589155	ECC-1	luminal epithelium:	n/a	n/a
3	MAFK	chr2:114588825-114589149	IMR90	lung:	n/a	chr2:114588976-114588991
4	E2F6	chr2:114588698-114589172	A549	lung:	n/a	n/a
5	MAFK	chr2:114588828-114589183	H1-hESC	embryonic stem cell:	n/a	chr2:114588976-114588991
6	FOS	chr2:114588852-114589136	MCF10A-Er-Src	breast:	n/a	n/a
7	EP300	chr2:114588861-114589135	K562	blood:	n/a	n/a
8	MAX	chr2:114588659-114589207	A549	lung:	n/a	n/a
9	FOS	chr2:114588907-114589131	MCF10A-Er-Src	breast:	n/a	n/a
10	MAX	chr2:114588575-114589297	A549	lung:	n/a	n/a
11	BACH1	chr2:114588833-114589134	K562	blood:	n/a	n/a
12	NR3C1	chr2:114588756-114589223	A549	lung:	n/a	n/a
13	MAX	chr2:114588580-114589165	ECC-1	luminal epithelium:	n/a	n/a
14	MYC	chr2:114588904-114589142	MCF10A-Er-Src	breast:	n/a	n/a
15	MAFK	chr2:114588828-114589156	HepG2	liver:	n/a	chr2:114588976-114588991
16	FOS	chr2:114588830-114589145	MCF10A-Er-Src	breast:	n/a	n/a
17	MAFF	chr2:114588770-114589183	K562	blood:	n/a	chr2:114588974-114588992
18	YY1	chr2:114588576-114589270	SK-N-SH	brain:	n/a	chr2:114588808-114588820
19	MAFF	chr2:114588806-114589145	HepG2	liver:	n/a	chr2:114588974-114588992
20	JUND	chr2:114588759-114589140	K562	blood:	n/a	n/a
21	MAFK	chr2:114588818-114589172	HepG2	liver:	n/a	chr2:114588976-114588991
22	FOSL2	chr2:114588726-114589218	A549	lung:	n/a	n/a
23	NFE2	chr2:114588817-114589157	K562	blood:	n/a	chr2:114588976-114588991

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114512943..114515625-chr2:114589095..114591354,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC35F5-3	chr2:114589107-114589304	ENSG00000228857
2	lnc-SLC35F5-3	chr2:114589107-114589303	NONHSAT073841
3	lnc-SLC35F5-3	chr2:114589107-114589162	NR_110174

Variant related genes	Relation type
ENSG00000244063	TF binding region
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10173512	0.94[ASN][1000 genomes]
rs10173891	0.87[ASN][1000 genomes]
rs10174686	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179207	0.87[ASN][1000 genomes]
rs10195450	0.87[ASN][1000 genomes]
rs10199857	0.87[ASN][1000 genomes]
rs10199930	0.87[ASN][1000 genomes]
rs10204719	0.87[ASN][1000 genomes]
rs10208093	0.87[ASN][1000 genomes]
rs11123215	1.00[ASN][1000 genomes]
rs11895582	1.00[ASN][1000 genomes]
rs11895596	1.00[ASN][1000 genomes]
rs12615093	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387748	0.87[ASN][1000 genomes]
rs13388533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394237	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396357	0.87[ASN][1000 genomes]
rs13399326	0.88[ASN][1000 genomes]
rs13428539	0.87[ASN][1000 genomes]
rs1467292	1.00[ASN][1000 genomes]
rs1962501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140262	1.00[ASN][1000 genomes]
rs2177263	1.00[ASN][1000 genomes]
rs4362566	1.00[ASN][1000 genomes]
rs4848357	1.00[ASN][1000 genomes]
rs6706992	0.87[ASN][1000 genomes]
rs6732402	0.87[ASN][1000 genomes]
rs6735673	0.87[ASN][1000 genomes]
rs6741785	1.00[ASN][1000 genomes]
rs6742452	0.87[ASN][1000 genomes]
rs6747278	0.87[ASN][1000 genomes]
rs72948681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948686	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561061	0.87[ASN][1000 genomes]
rs7573133	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9973578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114584600-114595600	Weak transcription	HepG2	liver
3	chr2:114584800-114592000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:114586400-114591400	Weak transcription	Fetal Intestine Large	intestine
5	chr2:114586400-114601000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:114587800-114590800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr2:114588400-114589200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:114588400-114589200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:114588400-114589200	Enhancers	Esophagus	oesophagus
10	chr2:114588400-114589200	Enhancers	NHEK	skin
11	chr2:114588600-114589200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:114588600-114589200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:114588600-114589200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:114588600-114589200	Weak transcription	Placenta	Placenta
15	chr2:114588600-114589200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:114588600-114589200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr2:114588600-114589200	Enhancers	HMEC	breast
18	chr2:114588600-114589200	Enhancers	K562	blood
19	chr2:114588800-114589200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:114588800-114589200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:114588800-114589200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:114588800-114589200	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:114588800-114589200	Flanking Active TSS	A549	lung
24	chr2:114588800-114589200	Enhancers	NH-A	brain
25	chr2:114588800-114589200	Enhancers	Osteobl	bone
26	chr2:114589000-114589200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:114589000-114589200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:114589000-114591400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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