Variant report

Variant	rs2140262
Chromosome Location	chr2:114596439-114596440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114514472..114517401-chr2:114595773..114597784,2	MCF-7	breast:
2	chr2:114595700..114597875-chr2:114633557..114635460,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC35F5-12	chr2:114596321-114596509	NONHSAT073845

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10173512	0.94[ASN][1000 genomes]
rs10173891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10174686	1.00[ASN][1000 genomes]
rs10179207	0.87[ASN][1000 genomes]
rs10195450	0.87[ASN][1000 genomes]
rs10199857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10199930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10204719	0.87[ASN][1000 genomes]
rs10208093	0.87[ASN][1000 genomes]
rs11123215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11895582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11895596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12615093	1.00[ASN][1000 genomes]
rs13387748	0.87[ASN][1000 genomes]
rs13388533	1.00[ASN][1000 genomes]
rs13394237	1.00[ASN][1000 genomes]
rs13396357	0.87[ASN][1000 genomes]
rs13399326	0.88[ASN][1000 genomes]
rs13428539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1467292	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1504043	1.00[JPT][hapmap]
rs1962501	1.00[ASN][1000 genomes]
rs2047883	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2177263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3828257	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4362566	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4848357	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6706992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6724586	1.00[JPT][hapmap]
rs6732402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6735673	0.87[ASN][1000 genomes]
rs6741741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6741785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6742452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6747278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs72948681	1.00[ASN][1000 genomes]
rs72948686	1.00[ASN][1000 genomes]
rs7561061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7573133	0.88[ASN][1000 genomes]
rs924804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9973379	1.00[ASN][1000 genomes]
rs9973578	1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114586400-114601000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:114589200-114600200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:114589200-114600200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:114589200-114600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:114591600-114597800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:114592400-114597600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:114592600-114597400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:114592800-114599400	Weak transcription	Placenta	Placenta
10	chr2:114595600-114598600	Enhancers	HepG2	liver
11	chr2:114596200-114596600	Enhancers	Fetal Intestine Large	intestine
12	chr2:114596200-114597400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:114596400-114596600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:114596400-114621000	Weak transcription	Aorta	Aorta

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