Variant report

Variant	rs6724586
Chromosome Location	chr2:114655586-114655587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114653670..114656368-chr2:114668759..114670499,2	MCF-7	breast:
2	chr2:114645610..114649008-chr2:114652847..114656238,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10173891	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10179207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10188927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194262	0.94[ASN][1000 genomes]
rs10195450	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10199857	1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10199930	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10204719	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10204979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208093	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11123215	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11895582	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11895596	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12617393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387748	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13393280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396357	0.87[ASN][1000 genomes]
rs13426411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428539	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13429261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432142	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1467292	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1504043	1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040419	1.00[EUR][1000 genomes]
rs2047883	0.85[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177263	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3828257	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278936	0.88[ASN][1000 genomes]
rs4362566	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4848357	1.00[JPT][hapmap]
rs59450025	1.00[EUR][1000 genomes]
rs6542179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6706992	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6732402	1.00[ASW][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6735673	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6741741	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741785	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6742452	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6747278	1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6759040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561061	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7575874	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924804	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
5	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:114649800-114655600	Enhancers	Small Intestine	intestine
7	chr2:114650000-114655600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
9	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
10	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
11	chr2:114651200-114655800	Enhancers	Brain Hippocampus Middle	brain
12	chr2:114651600-114658000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:114652000-114656000	Enhancers	NHLF	lung
14	chr2:114652000-114658000	Weak transcription	Pancreas	Pancrea
15	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
17	chr2:114652200-114658000	Enhancers	Duodenum Mucosa	Duodenum
18	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
19	chr2:114652400-114655800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:114652400-114656400	Weak transcription	Brain Germinal Matrix	brain
21	chr2:114652400-114656800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:114652400-114657200	Enhancers	HUVEC	blood vessel
23	chr2:114652400-114657800	Weak transcription	Aorta	Aorta
24	chr2:114652400-114657800	Weak transcription	Colonic Mucosa	Colon
25	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
26	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:114652800-114656000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr2:114653000-114655800	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr2:114653000-114658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:114653000-114659600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr2:114653200-114655600	Weak transcription	Fetal Brain Female	brain
32	chr2:114653200-114656000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:114653200-114658200	Enhancers	Liver	Liver
34	chr2:114653200-114658400	Enhancers	A549	lung
35	chr2:114653200-114659200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr2:114653200-114662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr2:114653400-114655600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr2:114653400-114655800	Enhancers	Fetal Heart	heart
39	chr2:114653400-114655800	Enhancers	Ovary	ovary
40	chr2:114653400-114656000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:114653400-114659000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr2:114653400-114662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:114653600-114655800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:114653600-114656000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr2:114653600-114658200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr2:114653800-114657400	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr2:114653800-114658000	Weak transcription	Spleen	Spleen
50	chr2:114653800-114658400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links