Variant report

Variant	rs675892
Chromosome Location	chr11:56867761-56867762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12786503	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797809	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799286	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66492572	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67301579	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73466546	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56866200-56868200	Weak transcription	Fetal Lung	lung
2	chr11:56866200-56871800	Weak transcription	Right Atrium	heart
3	chr11:56866400-56869400	Weak transcription	Fetal Stomach	stomach
4	chr11:56867000-56868600	Enhancers	Ovary	ovary
5	chr11:56867200-56867800	Enhancers	Spleen	Spleen
6	chr11:56867400-56868600	Weak transcription	Brain Germinal Matrix	brain
7	chr11:56867600-56868200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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