Variant report

Variant	rs66492572
Chromosome Location	chr11:56677431-56677432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12786503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804217	1.00[ASN][1000 genomes]
rs12807639	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623065	1.00[ASN][1000 genomes]
rs1783466	1.00[ASN][1000 genomes]
rs34250458	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34856622	1.00[ASN][1000 genomes]
rs66501822	1.00[ASN][1000 genomes]
rs67301579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675892	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67858506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683563	1.00[ASN][1000 genomes]
rs73466546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv520375	chr11:56669830-56704042	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56674600-56677600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:56674600-56677800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:56676600-56678200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:56676600-56678200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:56676600-56679200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:56676600-56679200	Enhancers	HMEC	breast
7	chr11:56677000-56678200	Enhancers	Fetal Intestine Large	intestine
8	chr11:56677200-56678200	Enhancers	NHEK	skin
9	chr11:56677200-56679200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:56677400-56677800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr11:56677400-56678200	Active TSS	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links