Variant report

Variant	rs12797809
Chromosome Location	chr11:56748564-56748565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12786503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804217	1.00[ASN][1000 genomes]
rs12807639	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623065	1.00[ASN][1000 genomes]
rs1783466	1.00[ASN][1000 genomes]
rs34250458	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34856622	1.00[ASN][1000 genomes]
rs66492572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66501822	1.00[ASN][1000 genomes]
rs67301579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675892	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67858506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683563	1.00[ASN][1000 genomes]
rs73466546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56748200-56748600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:56748200-56748600	Active TSS	Adipose Nuclei	Adipose
3	chr11:56748200-56748600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:56748200-56748600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr11:56748200-56748600	Active TSS	Right Atrium	heart
6	chr11:56748200-56748800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:56748200-56748800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:56748200-56748800	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr11:56748200-56748800	Active TSS	A549	lung
10	chr11:56748400-56748600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:56748400-56748600	Flanking Active TSS	NHEK	skin
12	chr11:56748400-56748800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:56748400-56748800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:56748400-56748800	Flanking Active TSS	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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