Variant report
| Variant | rs683563 |
|---|---|
| Chromosome Location | chr11:56630564-56630565 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:56618059..56620569-chr11:56629242..56631002,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12786503 | 1.00[ASN][1000 genomes] |
| rs12797809 | 1.00[ASN][1000 genomes] |
| rs12799286 | 1.00[ASN][1000 genomes] |
| rs12804217 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12807639 | 1.00[ASN][1000 genomes] |
| rs1623065 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1783466 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34250458 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34856622 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66492572 | 1.00[ASN][1000 genomes] |
| rs66501822 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67301579 | 1.00[ASN][1000 genomes] |
| rs67858506 | 1.00[ASN][1000 genomes] |
| rs73466546 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048328 | chr11:56471984-56649908 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2830406 | chr11:56481955-56650124 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv468577 | chr11:56503728-56704042 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv555101 | chr11:56503728-56704042 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv469960 | chr11:56605222-56704042 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1045889 | chr11:56624365-56737435 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:56626800-56634200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr11:56630200-56637000 | Weak transcription | Stomach Mucosa | stomach |
