Variant report

Variant	rs6763588
Chromosome Location	chr3:195132962-195132963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:195107747..195110594-chr3:195131187..195133391,2	MCF-7	breast:
2	chr3:195131548..195133612-chr3:195139507..195142026,2	K562	blood:

Variant related genes	Relation type
ENSG00000207368	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10439946	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10439947	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10439948	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10439949	1.00[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10933704	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs11706218	0.89[EUR][1000 genomes]
rs11718226	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs12054139	0.94[ASW][hapmap];0.91[CEU][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12054333	0.87[EUR][1000 genomes]
rs12054406	0.88[EUR][1000 genomes]
rs12629884	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12630009	0.88[EUR][1000 genomes]
rs12636736	0.83[CEU][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs13316914	0.86[EUR][1000 genomes]
rs13317705	0.89[EUR][1000 genomes]
rs13317782	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13320698	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13325966	0.89[EUR][1000 genomes]
rs1353133	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1538768	0.89[EUR][1000 genomes]
rs1826584	0.91[EUR][1000 genomes]
rs1890853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1994880	0.91[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs1994881	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2000051	0.83[CEU][hapmap]
rs2000052	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2029708	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2066154	0.88[EUR][1000 genomes]
rs2131685	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275518	0.94[ASW][hapmap];0.91[CEU][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2275519	0.91[CEU][hapmap]
rs2410792	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4677666	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs4677668	0.88[EUR][1000 genomes]
rs4677669	0.91[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs4677826	0.89[EUR][1000 genomes]
rs4677827	0.89[EUR][1000 genomes]
rs4677828	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4677829	0.89[EUR][1000 genomes]
rs4677832	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4677833	0.89[EUR][1000 genomes]
rs4677837	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4677838	0.91[EUR][1000 genomes]
rs4677839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4677840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4677842	0.91[EUR][1000 genomes]
rs4677843	0.91[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs4677844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57760978	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs58067895	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58178384	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59004692	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59551685	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60100329	0.89[EUR][1000 genomes]
rs60177727	0.89[EUR][1000 genomes]
rs62287069	0.88[EUR][1000 genomes]
rs62287106	0.88[EUR][1000 genomes]
rs62287107	0.89[EUR][1000 genomes]
rs62287108	0.89[EUR][1000 genomes]
rs62287109	0.87[EUR][1000 genomes]
rs62287111	0.89[EUR][1000 genomes]
rs62287119	0.89[EUR][1000 genomes]
rs62288360	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62288364	0.91[EUR][1000 genomes]
rs62288365	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62288367	0.90[EUR][1000 genomes]
rs62288369	0.91[EUR][1000 genomes]
rs62288441	0.86[EUR][1000 genomes]
rs62288442	0.85[EUR][1000 genomes]
rs6437373	0.91[CEU][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs6437375	1.00[ASW][hapmap];0.91[CEU][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6437376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6437471	0.91[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs6763335	0.91[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs6771771	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs6778652	0.86[EUR][1000 genomes]
rs6781311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6788868	0.86[EUR][1000 genomes]
rs6791563	0.91[CEU][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs6794216	0.89[EUR][1000 genomes]
rs6800221	0.91[CEU][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6800562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6801007	0.94[ASW][hapmap];0.91[CEU][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6801315	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6801750	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803477	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6803763	1.00[ASW][hapmap];0.91[CEU][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6806763	0.83[EUR][1000 genomes]
rs6806850	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs716898	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73208931	0.85[EUR][1000 genomes]
rs7430205	0.89[EUR][1000 genomes]
rs7611090	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7616598	0.91[EUR][1000 genomes]
rs7617936	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618499	0.89[EUR][1000 genomes]
rs7621133	0.94[ASW][hapmap];0.91[CEU][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7622180	0.83[CEU][hapmap]
rs7623135	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627054	0.89[EUR][1000 genomes]
rs7627671	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7635603	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7635906	0.89[EUR][1000 genomes]
rs7636824	0.88[EUR][1000 genomes]
rs7639146	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7641810	0.89[EUR][1000 genomes]
rs7650623	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7652612	0.86[EUR][1000 genomes]
rs7653406	0.88[EUR][1000 genomes]
rs9288744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9288746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9681021	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809730	0.89[EUR][1000 genomes]
rs9812506	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9813425	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9814214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9814344	0.90[EUR][1000 genomes]
rs9817672	0.91[EUR][1000 genomes]
rs9821765	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9826999	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9836665	0.91[EUR][1000 genomes]
rs9840309	1.00[CHB][hapmap]
rs9844354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9846555	0.90[EUR][1000 genomes]
rs9847544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848201	0.91[EUR][1000 genomes]
rs9848473	0.90[EUR][1000 genomes]
rs9854941	0.89[EUR][1000 genomes]
rs9855453	0.91[CEU][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs9859279	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9859822	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs9859902	0.91[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs9860798	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862710	0.88[EUR][1000 genomes]
rs9864603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868768	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9870236	0.91[EUR][1000 genomes]
rs9876967	0.85[EUR][1000 genomes]
rs9879305	0.91[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
2	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv533904	chr3:194868329-195438728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
4	nsv1010168	chr3:194874494-195135790	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv536877	chr3:194874494-195135790	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv1832781	chr3:194902818-195528226	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
7	nsv432508	chr3:194916131-195478861	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
8	nsv432510	chr3:194935314-195478861	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
9	nsv1005519	chr3:194964301-195340515	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
10	nsv432511	chr3:194986167-195479748	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
11	nsv432512	chr3:195007260-195475989	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
12	nsv878138	chr3:195057001-195477791	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
13	nsv878139	chr3:195058837-195158031	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv1799680	chr3:195060129-195154361	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
15	nsv878141	chr3:195065255-195158031	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1006229	chr3:195071421-195474751	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
17	esv2754364	chr3:195102703-195553690	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
18	esv2757028	chr3:195102787-195479748	Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
19	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
20	nsv878142	chr3:195109866-195143983	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
21	nsv878143	chr3:195115229-195158031	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv878144	chr3:195120090-195158031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv432513	chr3:195121072-195478861	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
24	nsv432514	chr3:195121110-195478861	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
25	nsv432515	chr3:195121110-195528226	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
26	nsv829824	chr3:195131067-195286698	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6763588	XXYLT1	cis	Esophagus Mucosa	GTEx
rs6763588	BCOR	trans	cerebellum	SCAN
rs6763588	TEX14	trans	cerebellum	SCAN
rs6763588	XXYLT1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195078000-195142200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:195088600-195146800	Weak transcription	Spleen	Spleen
3	chr3:195094800-195161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:195095200-195161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:195095800-195134200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:195106600-195137800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:195108800-195134000	Weak transcription	Placenta	Placenta
8	chr3:195109400-195144000	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:195112600-195138000	Weak transcription	Thymus	Thymus
10	chr3:195112600-195141400	Weak transcription	Fetal Stomach	stomach
11	chr3:195115400-195134200	Weak transcription	Lung	lung
12	chr3:195115600-195139200	Weak transcription	Psoas Muscle	Psoas
13	chr3:195116200-195143600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:195116400-195147600	Weak transcription	Fetal Intestine Small	intestine
15	chr3:195117200-195133400	Weak transcription	Liver	Liver
16	chr3:195118200-195144200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:195118800-195142200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:195123800-195146400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:195125000-195134200	Weak transcription	Ovary	ovary
20	chr3:195125000-195147600	Weak transcription	Left Ventricle	heart
21	chr3:195126600-195139800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:195126800-195134400	Weak transcription	Esophagus	oesophagus
23	chr3:195127000-195149800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:195127400-195133600	Weak transcription	HUVEC	blood vessel
25	chr3:195128000-195134200	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:195128000-195139200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:195128600-195138000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:195130000-195142000	Weak transcription	Brain Substantia Nigra	brain
29	chr3:195130000-195142400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:195130400-195134000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:195131000-195135000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:195131200-195133400	Strong transcription	Fetal Intestine Large	intestine
33	chr3:195131200-195134400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:195131200-195135000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:195131400-195135400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr3:195131600-195133000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:195131600-195133000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:195131600-195134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:195131600-195134200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:195131600-195134200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:195131600-195146800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr3:195131800-195133000	Weak transcription	NHDF-Ad	bronchial
43	chr3:195131800-195134400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr3:195131800-195137600	Weak transcription	NHEK	skin
45	chr3:195131800-195137800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:195131800-195154800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:195131800-195160600	Weak transcription	Hela-S3	cervix
48	chr3:195132000-195134200	Weak transcription	Fetal Thymus	thymus
49	chr3:195132000-195134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:195132000-195148000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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