Variant report

Variant	rs6801750
Chromosome Location	chr3:195103381-195103382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 164 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10439946	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10439947	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10439948	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10439949	1.00[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10933704	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs11706218	0.90[EUR][1000 genomes]
rs11718226	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs12054139	0.93[ASW][hapmap];0.91[CEU][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12054333	0.88[EUR][1000 genomes]
rs12054406	0.89[EUR][1000 genomes]
rs12629884	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12630009	0.89[EUR][1000 genomes]
rs12636736	0.83[CEU][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs13316914	0.87[EUR][1000 genomes]
rs13317705	0.89[EUR][1000 genomes]
rs13317782	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13320698	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13325966	0.89[EUR][1000 genomes]
rs1353133	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1538768	0.89[EUR][1000 genomes]
rs1826584	0.92[EUR][1000 genomes]
rs1890853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994880	0.91[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs1994881	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2000051	0.83[CEU][hapmap]
rs2000052	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2029708	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2066154	0.89[EUR][1000 genomes]
rs2131685	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275518	0.93[ASW][hapmap];0.91[CEU][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2275519	0.91[CEU][hapmap]
rs2410792	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4677666	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs4677668	0.89[EUR][1000 genomes]
rs4677669	0.91[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs4677826	0.90[EUR][1000 genomes]
rs4677827	0.90[EUR][1000 genomes]
rs4677828	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4677829	0.89[EUR][1000 genomes]
rs4677832	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4677833	0.90[EUR][1000 genomes]
rs4677837	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4677838	0.92[EUR][1000 genomes]
rs4677839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4677840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4677842	0.92[EUR][1000 genomes]
rs4677843	0.91[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs4677844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57760978	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs58067895	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58178384	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs59004692	0.87[EUR][1000 genomes]
rs59551685	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60100329	0.90[EUR][1000 genomes]
rs60177727	0.89[EUR][1000 genomes]
rs62287061	0.81[ASN][1000 genomes]
rs62287069	0.89[EUR][1000 genomes]
rs62287106	0.89[EUR][1000 genomes]
rs62287107	0.90[EUR][1000 genomes]
rs62287108	0.90[EUR][1000 genomes]
rs62287109	0.88[EUR][1000 genomes]
rs62287111	0.89[EUR][1000 genomes]
rs62287119	0.90[EUR][1000 genomes]
rs62288360	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62288364	0.92[EUR][1000 genomes]
rs62288365	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62288367	0.91[EUR][1000 genomes]
rs62288369	0.92[EUR][1000 genomes]
rs62288441	0.87[EUR][1000 genomes]
rs62288442	0.86[EUR][1000 genomes]
rs6437373	0.91[CEU][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs6437375	1.00[ASW][hapmap];0.91[CEU][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6437376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437471	0.91[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs6763335	0.91[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs6763588	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6771771	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs6778652	0.87[EUR][1000 genomes]
rs6781311	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6785382	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6788868	0.87[EUR][1000 genomes]
rs6791563	0.91[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs6794216	0.89[EUR][1000 genomes]
rs6800221	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs6800562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6801007	0.93[ASW][hapmap];0.91[CEU][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6801315	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6803477	0.84[EUR][1000 genomes]
rs6803763	1.00[ASW][hapmap];0.91[CEU][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6806763	0.84[EUR][1000 genomes]
rs6806850	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs716898	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73208931	0.86[EUR][1000 genomes]
rs7430205	0.90[EUR][1000 genomes]
rs7611090	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7616598	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7617936	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7618499	0.90[EUR][1000 genomes]
rs7621133	0.93[ASW][hapmap];0.91[CEU][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7622180	0.83[CEU][hapmap]
rs7623135	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627054	0.90[EUR][1000 genomes]
rs7627671	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635603	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7635906	0.89[EUR][1000 genomes]
rs7636824	0.89[EUR][1000 genomes]
rs7639146	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7641810	0.90[EUR][1000 genomes]
rs7650623	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7652612	0.86[EUR][1000 genomes]
rs7653406	0.89[EUR][1000 genomes]
rs9288744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9288746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9681021	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9809730	0.90[EUR][1000 genomes]
rs9812506	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9813425	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9814214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814344	0.91[EUR][1000 genomes]
rs9817672	0.92[EUR][1000 genomes]
rs9821765	0.87[EUR][1000 genomes]
rs9826999	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9836665	0.92[EUR][1000 genomes]
rs9840309	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9844354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846555	0.91[EUR][1000 genomes]
rs9847544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9848201	0.92[EUR][1000 genomes]
rs9848473	0.91[EUR][1000 genomes]
rs9854941	0.89[EUR][1000 genomes]
rs9855453	0.91[CEU][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs9859279	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9859822	1.00[CHB][hapmap];0.82[GIH][hapmap];0.81[ASN][1000 genomes]
rs9859902	0.91[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs9860798	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9862710	0.89[EUR][1000 genomes]
rs9864603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9866537	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9868768	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870236	0.92[EUR][1000 genomes]
rs9876967	0.86[EUR][1000 genomes]
rs9879305	0.91[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
4	nsv533904	chr3:194868329-195438728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
5	nsv1010168	chr3:194874494-195135790	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv536877	chr3:194874494-195135790	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv1832781	chr3:194902818-195528226	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
8	nsv432508	chr3:194916131-195478861	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
9	nsv432510	chr3:194935314-195478861	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
10	nsv1005519	chr3:194964301-195340515	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
11	nsv432511	chr3:194986167-195479748	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv432512	chr3:195007260-195475989	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
13	nsv526569	chr3:195038287-195123495	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
14	nsv878138	chr3:195057001-195477791	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
15	nsv878139	chr3:195058837-195158031	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv1799680	chr3:195060129-195154361	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
17	nsv878141	chr3:195065255-195158031	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1006229	chr3:195071421-195474751	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
19	esv2754364	chr3:195102703-195553690	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
20	esv2757028	chr3:195102787-195479748	Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
21	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6801750	XXYLT1	cis	Skin Sun Exposed Lower leg	GTEx
rs6801750	XXYLT1	cis	Esophagus Mucosa	GTEx
rs6801750	BCOR	trans	cerebellum	SCAN
rs6801750	TEX14	trans	cerebellum	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195040400-195108400	Weak transcription	Colonic Mucosa	Colon
2	chr3:195040600-195111200	Weak transcription	Fetal Brain Male	brain
3	chr3:195041000-195131200	Weak transcription	Gastric	stomach
4	chr3:195049600-195106000	Weak transcription	HUVEC	blood vessel
5	chr3:195052400-195118000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:195065000-195114800	Weak transcription	Osteobl	bone
7	chr3:195074200-195113200	Weak transcription	HSMMtube	muscle
8	chr3:195074800-195118000	Weak transcription	K562	blood
9	chr3:195077000-195105800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:195077400-195118000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:195077800-195114200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:195077800-195117800	Weak transcription	Brain Angular Gyrus	brain
13	chr3:195077800-195122800	Weak transcription	Right Ventricle	heart
14	chr3:195078000-195103400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:195078000-195106200	Weak transcription	Brain Substantia Nigra	brain
16	chr3:195078000-195110600	Weak transcription	Left Ventricle	heart
17	chr3:195078000-195142200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:195078400-195106200	Weak transcription	Fetal Heart	heart
19	chr3:195078400-195107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:195078400-195107200	Weak transcription	Esophagus	oesophagus
21	chr3:195078400-195111000	Weak transcription	Fetal Brain Female	brain
22	chr3:195078600-195118000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:195079000-195106200	Weak transcription	Fetal Kidney	kidney
24	chr3:195079800-195114400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:195084200-195108800	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:195087200-195104000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr3:195087400-195109000	Weak transcription	Pancreas	Pancrea
28	chr3:195087800-195131200	Weak transcription	NHDF-Ad	bronchial
29	chr3:195088200-195115200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:195088400-195111200	Weak transcription	NH-A	brain
31	chr3:195088600-195146800	Weak transcription	Spleen	Spleen
32	chr3:195090800-195116800	Weak transcription	Aorta	Aorta
33	chr3:195091200-195108600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:195091200-195108600	Weak transcription	Fetal Intestine Large	intestine
35	chr3:195091400-195105800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr3:195091400-195105800	Weak transcription	Placenta	Placenta
37	chr3:195091400-195106400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:195091400-195116200	Weak transcription	Liver	Liver
39	chr3:195093400-195105600	Weak transcription	NHEK	skin
40	chr3:195093600-195106200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:195093600-195110400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:195093600-195114800	Weak transcription	Lung	lung
43	chr3:195093800-195114800	Weak transcription	Ovary	ovary
44	chr3:195094000-195105800	Weak transcription	HMEC	breast
45	chr3:195094800-195108400	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:195094800-195161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:195095200-195110400	Weak transcription	Thymus	Thymus
48	chr3:195095200-195111200	Weak transcription	Fetal Stomach	stomach
49	chr3:195095200-195116800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr3:195095200-195161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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