Variant report

Variant	rs6765665
Chromosome Location	chr3:105294126-105294127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16851323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35248527	1.00[AMR][1000 genomes]
rs55866944	1.00[AMR][1000 genomes]
rs55924889	1.00[AMR][1000 genomes]
rs56236143	1.00[AMR][1000 genomes]
rs58474331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58999138	1.00[AMR][1000 genomes]
rs6437596	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6437597	1.00[AMR][1000 genomes]
rs6437598	1.00[AMR][1000 genomes]
rs6793359	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs73854306	1.00[AMR][1000 genomes]
rs73854308	1.00[AMR][1000 genomes]
rs73854309	1.00[AMR][1000 genomes]
rs73854310	1.00[AMR][1000 genomes]
rs7618851	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7632648	1.00[AMR][1000 genomes]
rs7632662	1.00[AMR][1000 genomes]
rs7640268	1.00[AMR][1000 genomes]
rs7643467	0.83[YRI][hapmap]
rs7646694	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1012669	chr3:105290140-105321201	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105221400-105300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:105260800-105297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:105260800-105299800	Weak transcription	Pancreas	Pancrea
4	chr3:105263000-105295400	Weak transcription	Brain Angular Gyrus	brain
5	chr3:105268400-105297800	Weak transcription	NHLF	lung
6	chr3:105271600-105297000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:105271600-105303000	Weak transcription	Aorta	Aorta
8	chr3:105272200-105312800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:105272400-105302800	Weak transcription	NHEK	skin
10	chr3:105273000-105295200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:105273200-105295800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:105273200-105303000	Weak transcription	HMEC	breast
13	chr3:105273400-105297600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:105273400-105297600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:105273400-105299800	Weak transcription	NHDF-Ad	bronchial
16	chr3:105273800-105297400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:105274000-105303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:105277200-105299200	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:105278600-105297000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:105278600-105297400	Weak transcription	GM12878-XiMat	blood
21	chr3:105284000-105295600	Weak transcription	Fetal Intestine Small	intestine
22	chr3:105285200-105295600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:105286400-105297600	Weak transcription	HUVEC	blood vessel
24	chr3:105288600-105297000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:105289400-105294400	Strong transcription	Liver	Liver
26	chr3:105289400-105296000	Strong transcription	Osteobl	bone
27	chr3:105291200-105297200	Weak transcription	Primary B cells from cord blood	blood
28	chr3:105291400-105295800	Weak transcription	Brain Substantia Nigra	brain
29	chr3:105291400-105297000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:105291400-105297800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:105291600-105297600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:105292000-105297200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:105292000-105303200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:105292200-105297800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:105292400-105296600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:105292600-105294200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr3:105292600-105296200	Strong transcription	NH-A	brain
38	chr3:105292800-105295600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:105293400-105294400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:105293400-105296600	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr3:105293600-105294400	Strong transcription	HSMM	muscle
42	chr3:105294000-105295400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:105294000-105295400	Weak transcription	Monocytes-CD14+_RO01746	blood

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