Variant report

Variant	rs6765716
Chromosome Location	chr3:105595025-105595026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105594821..105597024-chr3:105599746..105602672,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1020327	1.00[AMR][1000 genomes]
rs1025885	1.00[AMR][1000 genomes]
rs1025886	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1036877	1.00[AMR][1000 genomes]
rs1039545	1.00[AMR][1000 genomes]
rs10933832	1.00[AMR][1000 genomes]
rs1348348	1.00[AMR][1000 genomes]
rs1443099	1.00[AMR][1000 genomes]
rs1443107	1.00[AMR][1000 genomes]
rs1503922	1.00[AMR][1000 genomes]
rs1548056	1.00[AMR][1000 genomes]
rs1561920	1.00[AMR][1000 genomes]
rs1822348	1.00[AMR][1000 genomes]
rs1838045	1.00[AMR][1000 genomes]
rs1867428	1.00[AMR][1000 genomes]
rs1867429	1.00[AMR][1000 genomes]
rs1963622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1992520	1.00[AMR][1000 genomes]
rs2120102	0.89[YRI][hapmap]
rs2197351	1.00[AMR][1000 genomes]
rs2221379	1.00[AMR][1000 genomes]
rs3862049	1.00[AMR][1000 genomes]
rs4243428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4282093	1.00[AMR][1000 genomes]
rs4613490	1.00[AMR][1000 genomes]
rs4894945	1.00[AMR][1000 genomes]
rs4894947	1.00[AMR][1000 genomes]
rs4894948	1.00[AMR][1000 genomes]
rs4894959	1.00[AMR][1000 genomes]
rs4894961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437615	1.00[AMR][1000 genomes]
rs6437617	1.00[AMR][1000 genomes]
rs6437619	0.90[YRI][hapmap]
rs6437625	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768096	1.00[AMR][1000 genomes]
rs6804286	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6805675	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs7622735	1.00[AMR][1000 genomes]
rs7643647	1.00[AMR][1000 genomes]
rs7649437	1.00[AMR][1000 genomes]
rs769317	0.90[YRI][hapmap]
rs9288816	1.00[AMR][1000 genomes]
rs9288819	1.00[AMR][1000 genomes]
rs9288820	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs976961	1.00[AMR][1000 genomes]
rs976962	1.00[AMR][1000 genomes]
rs9809911	1.00[AMR][1000 genomes]
rs9811870	1.00[AMR][1000 genomes]
rs981479	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs9830539	1.00[AMR][1000 genomes]
rs9831221	1.00[AMR][1000 genomes]
rs9833645	1.00[AMR][1000 genomes]
rs9838768	1.00[AMR][1000 genomes]
rs9859644	1.00[AMR][1000 genomes]
rs9866153	0.80[YRI][hapmap]
rs9872290	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105589000-105595200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:105589000-105601200	Weak transcription	Aorta	Aorta
3	chr3:105589000-105601200	Weak transcription	Thymus	Thymus
4	chr3:105589000-105601200	Weak transcription	NH-A	brain
5	chr3:105589200-105601200	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:105589400-105596400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:105589400-105596800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:105589800-105595400	Weak transcription	Primary T cells from cord blood	blood
9	chr3:105589800-105595800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:105589800-105595800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:105590000-105595600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:105590000-105595800	Weak transcription	Primary B cells from cord blood	blood
13	chr3:105590200-105595200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:105590200-105595200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:105590400-105595800	Weak transcription	Fetal Kidney	kidney
16	chr3:105590600-105595200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:105590800-105595800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:105590800-105596000	Weak transcription	NHDF-Ad	bronchial
19	chr3:105590800-105597000	Weak transcription	Fetal Lung	lung
20	chr3:105594000-105595200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:105594400-105595600	Weak transcription	Osteobl	bone
22	chr3:105594400-105595800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr3:105594600-105595800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:105595000-105595400	Enhancers	Fetal Intestine Large	intestine
25	chr3:105595000-105595600	Enhancers	Fetal Intestine Small	intestine
26	chr3:105595000-105595800	Enhancers	Small Intestine	intestine
27	chr3:105595000-105595800	Enhancers	Stomach Mucosa	stomach
28	chr3:105595000-105596000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:105595000-105596200	Enhancers	Primary T cells fromperipheralblood	blood

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