Variant report

Variant	rs6804286
Chromosome Location	chr3:105599627-105599628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1020327	1.00[AMR][1000 genomes]
rs1025885	1.00[AMR][1000 genomes]
rs1025886	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1036877	1.00[AMR][1000 genomes]
rs1039545	1.00[AMR][1000 genomes]
rs10933832	1.00[AMR][1000 genomes]
rs1348348	1.00[AMR][1000 genomes]
rs1443099	1.00[AMR][1000 genomes]
rs1443107	1.00[AMR][1000 genomes]
rs1503922	1.00[AMR][1000 genomes]
rs1548056	1.00[AMR][1000 genomes]
rs1561920	1.00[AMR][1000 genomes]
rs1822348	1.00[AMR][1000 genomes]
rs1838045	1.00[AMR][1000 genomes]
rs1867428	1.00[AMR][1000 genomes]
rs1867429	1.00[AMR][1000 genomes]
rs1963622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1992520	1.00[AMR][1000 genomes]
rs2120102	0.89[YRI][hapmap]
rs2197351	1.00[AMR][1000 genomes]
rs2221379	1.00[AMR][1000 genomes]
rs3862049	1.00[AMR][1000 genomes]
rs4243428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4282093	1.00[AMR][1000 genomes]
rs4613490	1.00[AMR][1000 genomes]
rs4894945	1.00[AMR][1000 genomes]
rs4894947	1.00[AMR][1000 genomes]
rs4894948	1.00[AMR][1000 genomes]
rs4894959	1.00[AMR][1000 genomes]
rs4894961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437615	1.00[AMR][1000 genomes]
rs6437617	1.00[AMR][1000 genomes]
rs6437619	0.90[YRI][hapmap]
rs6437625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768096	1.00[AMR][1000 genomes]
rs6805675	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs7622735	1.00[AMR][1000 genomes]
rs7643647	1.00[AMR][1000 genomes]
rs7649437	1.00[AMR][1000 genomes]
rs769317	0.90[YRI][hapmap]
rs9288816	1.00[AMR][1000 genomes]
rs9288819	1.00[AMR][1000 genomes]
rs9288820	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs976961	1.00[AMR][1000 genomes]
rs976962	1.00[AMR][1000 genomes]
rs9809911	1.00[AMR][1000 genomes]
rs9811870	1.00[AMR][1000 genomes]
rs981479	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs9830539	1.00[AMR][1000 genomes]
rs9831221	1.00[AMR][1000 genomes]
rs9833645	1.00[AMR][1000 genomes]
rs9838768	1.00[AMR][1000 genomes]
rs9859644	1.00[AMR][1000 genomes]
rs9866153	0.80[YRI][hapmap]
rs9872290	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105589000-105601200	Weak transcription	Aorta	Aorta
2	chr3:105589000-105601200	Weak transcription	Thymus	Thymus
3	chr3:105589000-105601200	Weak transcription	NH-A	brain
4	chr3:105589200-105601200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:105596200-105601200	Weak transcription	Fetal Kidney	kidney
6	chr3:105596400-105601200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:105596600-105601200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:105596600-105601200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:105596600-105601200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:105597000-105601200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:105597200-105601200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:105597200-105601200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:105597200-105601200	Weak transcription	NHLF	lung
14	chr3:105597200-105601400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:105597400-105601200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:105597400-105601200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:105597400-105601200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:105597400-105601200	Weak transcription	Osteobl	bone
19	chr3:105597600-105601200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:105597600-105601200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:105597600-105601200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:105597600-105601200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:105597600-105601200	Weak transcription	Fetal Lung	lung
24	chr3:105597600-105601400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:105597600-105601400	Weak transcription	Primary T cells from cord blood	blood
26	chr3:105597600-105601400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:105599200-105600200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:105599200-105601200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr3:105599400-105600000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:105599400-105600400	Enhancers	Stomach Mucosa	stomach

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