Variant report

Variant	rs6766498
Chromosome Location	chr3:68497840-68497841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10433502	0.80[GIH][hapmap];0.83[TSI][hapmap]
rs11914870	0.83[TSI][hapmap]
rs1510363	0.80[MEX][hapmap];0.82[AMR][1000 genomes]
rs1553825	0.94[ASN][1000 genomes]
rs2136717	0.85[ASN][1000 genomes]
rs4855480	0.95[ASN][1000 genomes]
rs4855482	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4855489	0.82[JPT][hapmap]
rs6549127	0.81[GIH][hapmap];0.83[TSI][hapmap]
rs73092812	0.95[ASN][1000 genomes]
rs73092815	0.95[ASN][1000 genomes]
rs73092834	0.91[ASN][1000 genomes]
rs73111020	0.84[AMR][1000 genomes]
rs7653487	0.88[ASN][1000 genomes]
rs956352	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9683295	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68497000-68498600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:68497400-68502800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links