Variant report

Variant	rs4855480
Chromosome Location	chr3:68500935-68500936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12488594	0.85[CEU][hapmap]
rs12633931	0.85[CEU][hapmap]
rs1553825	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17047798	0.85[CEU][hapmap]
rs2136717	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35845454	0.82[EUR][1000 genomes]
rs4389487	0.83[EUR][1000 genomes]
rs4855482	0.84[CEU][hapmap]
rs4855483	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4855488	0.83[CEU][hapmap]
rs4855489	0.85[CEU][hapmap]
rs61014284	0.80[EUR][1000 genomes]
rs6766498	0.95[ASN][1000 genomes]
rs6778185	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6801913	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs73092812	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092815	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092834	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73092844	0.86[EUR][1000 genomes]
rs73092847	0.86[EUR][1000 genomes]
rs73092848	0.85[EUR][1000 genomes]
rs73092849	0.85[EUR][1000 genomes]
rs73111013	0.90[AFR][1000 genomes]
rs73111015	0.90[AFR][1000 genomes]
rs73111018	0.90[AFR][1000 genomes]
rs73111023	1.00[AFR][1000 genomes]
rs73111024	0.81[AFR][1000 genomes]
rs7634101	0.90[AFR][1000 genomes]
rs7646334	0.90[AFR][1000 genomes]
rs7653487	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs956352	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68497400-68502800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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