Variant report

Variant	rs17047798
Chromosome Location	chr3:68565610-68565611
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12488594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12489309	0.91[JPT][hapmap]
rs12633931	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1912458	0.87[EUR][1000 genomes]
rs35845454	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4634123	0.83[JPT][hapmap]
rs4855480	0.85[CEU][hapmap]
rs4855483	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4855485	0.92[JPT][hapmap]
rs4855488	0.94[CEU][hapmap]
rs4855489	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6766759	0.87[JPT][hapmap]
rs6778185	0.90[CEU][hapmap];0.87[CHB][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6801913	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73092844	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73092847	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73092848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73092849	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs956352	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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