Variant report

Variant	rs4855483
Chromosome Location	chr3:68526384-68526385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12488594	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap]
rs12633931	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs1553825	0.85[EUR][1000 genomes]
rs17047798	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1912458	0.83[EUR][1000 genomes]
rs2136717	0.89[EUR][1000 genomes]
rs35845454	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4389487	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4634123	0.87[CHB][hapmap]
rs4855480	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4855488	0.94[CEU][hapmap]
rs4855489	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6766759	0.82[JPT][hapmap]
rs6778185	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6801913	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs73092812	0.83[EUR][1000 genomes]
rs73092815	0.83[EUR][1000 genomes]
rs73092834	0.90[EUR][1000 genomes]
rs73092844	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092847	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73092848	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092849	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7653487	0.87[EUR][1000 genomes]
rs956352	0.84[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68523000-68531600	Weak transcription	Colon Smooth Muscle	Colon

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