Variant report

Variant	rs6778185
Chromosome Location	chr3:68522791-68522792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11927573	0.91[YRI][hapmap]
rs12488594	0.90[CEU][hapmap];0.87[CHB][hapmap];0.91[YRI][hapmap]
rs12633931	0.89[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs1553825	0.88[EUR][1000 genomes]
rs17047798	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs2136717	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35845454	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4389487	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4634123	0.82[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs4855480	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4855482	0.81[CHD][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap]
rs4855483	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4855488	0.83[CEU][hapmap]
rs4855489	0.90[CEU][hapmap];0.81[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs6766759	0.87[CHD][hapmap]
rs6801913	0.95[CEU][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs73092812	0.85[EUR][1000 genomes]
rs73092815	0.85[EUR][1000 genomes]
rs73092834	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73092844	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73092847	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092848	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73092849	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7653487	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs956352	0.85[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68520800-68523200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:68521600-68523000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:68522000-68523000	Enhancers	Colon Smooth Muscle	Colon
4	chr3:68522600-68523000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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