Variant report

Variant	rs4855482
Chromosome Location	chr3:68505856-68505857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12633931	0.93[GIH][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap]
rs1553825	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2136717	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4277695	0.82[MEX][hapmap]
rs4389487	0.84[EUR][1000 genomes]
rs4634123	0.85[GIH][hapmap];0.88[TSI][hapmap]
rs4855480	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4855483	0.83[EUR][1000 genomes]
rs4855489	0.93[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap]
rs61014284	0.84[EUR][1000 genomes]
rs6766498	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6778185	0.81[CHD][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs6801913	0.86[GIH][hapmap];0.94[TSI][hapmap]
rs73092812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73092815	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73092834	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73092844	0.83[EUR][1000 genomes]
rs73092847	0.83[EUR][1000 genomes]
rs73092848	0.82[EUR][1000 genomes]
rs73092849	0.82[EUR][1000 genomes]
rs7634101	1.00[ASW][hapmap]
rs7653487	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs956352	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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