Variant report

Variant	rs6769287
Chromosome Location	chr3:100961159-100961160
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56048570	0.82[AFR][1000 genomes]
rs56224524	0.82[AFR][1000 genomes]
rs56899761	0.82[AFR][1000 genomes]
rs57352158	0.82[AFR][1000 genomes]
rs57914183	0.82[AFR][1000 genomes]
rs58676554	1.00[AFR][1000 genomes]
rs59414580	0.82[AFR][1000 genomes]
rs59589993	1.00[AFR][1000 genomes]
rs59858311	0.82[AFR][1000 genomes]
rs61520376	0.82[AFR][1000 genomes]
rs72930571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863006	0.82[AFR][1000 genomes]
rs73863013	0.88[AFR][1000 genomes]
rs73863023	0.88[AFR][1000 genomes]
rs73863024	0.82[AFR][1000 genomes]
rs73866511	0.82[AFR][1000 genomes]
rs73866512	0.82[AFR][1000 genomes]
rs73866514	0.82[AFR][1000 genomes]
rs7627858	0.82[AFR][1000 genomes]
rs7633637	0.82[AFR][1000 genomes]
rs7634138	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100942200-100967400	Weak transcription	HSMMtube	muscle
2	chr3:100950600-100964600	Weak transcription	Right Ventricle	heart
3	chr3:100954800-100992600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:100955000-100994000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:100958800-101012800	Weak transcription	Left Ventricle	heart
6	chr3:100959800-100965200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:100960000-100963200	Strong transcription	Primary T cells from cord blood	blood
8	chr3:100960400-100967800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:100960400-100971200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:100960600-100961600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:100960800-100962400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:100961000-100963600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:100961000-100967400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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