Variant report

Variant	rs56048570
Chromosome Location	chr3:100924600-100924601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs55633082	1.00[AMR][1000 genomes]
rs55754809	1.00[AMR][1000 genomes]
rs56088937	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56224524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56258386	1.00[AMR][1000 genomes]
rs56899761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56908127	1.00[AMR][1000 genomes]
rs57352158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57914183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58254954	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676554	0.82[AFR][1000 genomes]
rs59044339	1.00[AMR][1000 genomes]
rs59414580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59589993	0.82[AFR][1000 genomes]
rs59858311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60017115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60537707	1.00[AMR][1000 genomes]
rs60662543	1.00[AMR][1000 genomes]
rs60720157	1.00[AMR][1000 genomes]
rs61348803	1.00[AMR][1000 genomes]
rs61520376	1.00[AFR][1000 genomes]
rs61678223	1.00[AMR][1000 genomes]
rs6769287	0.82[AFR][1000 genomes]
rs6784356	1.00[AMR][1000 genomes]
rs6785823	1.00[AMR][1000 genomes]
rs6795771	1.00[AMR][1000 genomes]
rs72930571	0.82[AFR][1000 genomes]
rs73863006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863013	1.00[AMR][1000 genomes]
rs73863023	1.00[AMR][1000 genomes]
rs73863024	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863036	1.00[AMR][1000 genomes]
rs73863083	1.00[AMR][1000 genomes]
rs73864333	1.00[AMR][1000 genomes]
rs73864334	1.00[AMR][1000 genomes]
rs73864335	1.00[AMR][1000 genomes]
rs73864347	1.00[AMR][1000 genomes]
rs73864348	1.00[AMR][1000 genomes]
rs73864349	1.00[AMR][1000 genomes]
rs73864353	1.00[AMR][1000 genomes]
rs73864361	1.00[AMR][1000 genomes]
rs73864374	1.00[AMR][1000 genomes]
rs73864376	1.00[AMR][1000 genomes]
rs73864381	1.00[AMR][1000 genomes]
rs73864386	1.00[AMR][1000 genomes]
rs73864388	1.00[AMR][1000 genomes]
rs73864390	1.00[AMR][1000 genomes]
rs73864391	1.00[AMR][1000 genomes]
rs73864393	1.00[AMR][1000 genomes]
rs73866510	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73866511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73866512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73866514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7627858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7633637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100921600-100925600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:100923600-100925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:100924000-100924600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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