Variant report

Variant	rs73864374
Chromosome Location	chr3:100868937-100868938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100853621..100855255-chr3:100868123..100871054,2	K562	blood:
2	chr3:100865942..100869097-chr3:100876811..100879865,3	K562	blood:
3	chr3:100859668..100862524-chr3:100863503..100868980,10	K562	blood:
4	chr3:100862855..100865653-chr3:100866375..100868963,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs55633082	1.00[AMR][1000 genomes]
rs55754809	1.00[AMR][1000 genomes]
rs56048570	1.00[AMR][1000 genomes]
rs56088937	1.00[AMR][1000 genomes]
rs56224524	1.00[AMR][1000 genomes]
rs56258386	1.00[AMR][1000 genomes]
rs56899761	1.00[AMR][1000 genomes]
rs56908127	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57352158	1.00[AMR][1000 genomes]
rs57914183	1.00[AMR][1000 genomes]
rs58254954	1.00[AMR][1000 genomes]
rs59414580	1.00[AMR][1000 genomes]
rs59858311	1.00[AMR][1000 genomes]
rs60017115	1.00[AMR][1000 genomes]
rs60537707	1.00[AMR][1000 genomes]
rs60662543	1.00[AMR][1000 genomes]
rs60720157	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61348803	1.00[AMR][1000 genomes]
rs61678223	1.00[AMR][1000 genomes]
rs6784356	1.00[AMR][1000 genomes]
rs6785823	1.00[AMR][1000 genomes]
rs6788790	1.00[AMR][1000 genomes]
rs6795771	1.00[AMR][1000 genomes]
rs73863006	1.00[AMR][1000 genomes]
rs73863013	1.00[AMR][1000 genomes]
rs73863023	1.00[AMR][1000 genomes]
rs73863024	1.00[AMR][1000 genomes]
rs73863036	1.00[AMR][1000 genomes]
rs73863083	1.00[AMR][1000 genomes]
rs73864333	1.00[AMR][1000 genomes]
rs73864334	1.00[AMR][1000 genomes]
rs73864335	1.00[AMR][1000 genomes]
rs73864347	1.00[AMR][1000 genomes]
rs73864348	1.00[AMR][1000 genomes]
rs73864349	1.00[AMR][1000 genomes]
rs73864353	1.00[AMR][1000 genomes]
rs73864361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73864376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73864381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73864386	1.00[AMR][1000 genomes]
rs73864388	1.00[AMR][1000 genomes]
rs73864390	1.00[AMR][1000 genomes]
rs73864391	1.00[AMR][1000 genomes]
rs73864393	1.00[AMR][1000 genomes]
rs73866510	1.00[AMR][1000 genomes]
rs73866511	1.00[AMR][1000 genomes]
rs73866512	1.00[AMR][1000 genomes]
rs73866514	1.00[AMR][1000 genomes]
rs7627858	1.00[AMR][1000 genomes]
rs7633637	1.00[AMR][1000 genomes]
rs7634138	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877223	chr3:100817043-100871443	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100863200-100872400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:100867200-100869400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:100868000-100869000	Weak transcription	K562	blood
4	chr3:100868200-100873800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links