Variant report

Variant	rs73863024
Chromosome Location	chr3:100948011-100948012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:28788420..28790835-chr3:100946089..100948529,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163803	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs55633082	1.00[AMR][1000 genomes]
rs55754809	1.00[AMR][1000 genomes]
rs56048570	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56088937	1.00[AMR][1000 genomes]
rs56224524	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56258386	1.00[AMR][1000 genomes]
rs56899761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56908127	1.00[AMR][1000 genomes]
rs57352158	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57914183	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58254954	1.00[AMR][1000 genomes]
rs58676554	0.82[AFR][1000 genomes]
rs59044339	1.00[AMR][1000 genomes]
rs59414580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59589993	0.82[AFR][1000 genomes]
rs59858311	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60017115	1.00[AMR][1000 genomes]
rs60537707	1.00[AMR][1000 genomes]
rs60662543	1.00[AMR][1000 genomes]
rs60720157	1.00[AMR][1000 genomes]
rs61348803	1.00[AMR][1000 genomes]
rs61520376	0.86[AFR][1000 genomes]
rs61678223	1.00[AMR][1000 genomes]
rs6769287	0.82[AFR][1000 genomes]
rs6784356	1.00[AMR][1000 genomes]
rs6785823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6795771	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72930571	0.82[AFR][1000 genomes]
rs73863006	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863023	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863083	1.00[AMR][1000 genomes]
rs73864333	1.00[AMR][1000 genomes]
rs73864334	1.00[AMR][1000 genomes]
rs73864335	1.00[AMR][1000 genomes]
rs73864347	1.00[AMR][1000 genomes]
rs73864348	1.00[AMR][1000 genomes]
rs73864349	1.00[AMR][1000 genomes]
rs73864353	1.00[AMR][1000 genomes]
rs73864361	1.00[AMR][1000 genomes]
rs73864374	1.00[AMR][1000 genomes]
rs73864376	1.00[AMR][1000 genomes]
rs73864381	1.00[AMR][1000 genomes]
rs73864386	1.00[AMR][1000 genomes]
rs73864388	1.00[AMR][1000 genomes]
rs73864390	1.00[AMR][1000 genomes]
rs73864391	1.00[AMR][1000 genomes]
rs73864393	1.00[AMR][1000 genomes]
rs73866510	1.00[AMR][1000 genomes]
rs73866511	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73866512	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73866514	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7627858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7633637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100942200-100967400	Weak transcription	HSMMtube	muscle
2	chr3:100944200-100949800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:100944600-100960000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:100946000-100948200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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