Variant report

Variant	rs6772219
Chromosome Location	chr3:155145217-155145218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155140732..155143652-chr3:155144981..155146803,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11925808	0.94[AFR][1000 genomes]
rs28503947	0.97[AFR][1000 genomes]
rs36052772	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4302412	0.80[AFR][1000 genomes]
rs4352413	0.85[AFR][1000 genomes]
rs4392458	0.83[AFR][1000 genomes]
rs4630983	0.92[YRI][hapmap];0.97[AFR][1000 genomes]
rs57517191	1.00[EUR][1000 genomes]
rs58252841	1.00[EUR][1000 genomes]
rs60701022	1.00[EUR][1000 genomes]
rs6440980	1.00[EUR][1000 genomes]
rs6440981	1.00[EUR][1000 genomes]
rs6440982	0.83[ASW][hapmap];0.91[MKK][hapmap];0.83[AFR][1000 genomes]
rs6440983	0.86[AFR][1000 genomes]
rs6440984	0.97[AFR][1000 genomes]
rs6777732	0.83[AFR][1000 genomes]
rs6782818	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6786372	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6789445	1.00[EUR][1000 genomes]
rs6791188	0.83[AFR][1000 genomes]
rs6791222	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs6802130	0.83[ASW][hapmap];0.95[MKK][hapmap];0.83[AFR][1000 genomes]
rs6802336	0.90[YRI][hapmap]
rs6805227	0.83[AFR][1000 genomes]
rs73009744	1.00[EUR][1000 genomes]
rs73873183	1.00[EUR][1000 genomes]
rs7637223	0.83[ASW][hapmap];0.92[MKK][hapmap];0.83[AFR][1000 genomes]
rs7639284	0.83[ASW][hapmap];0.94[MKK][hapmap]
rs9681845	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155142200-155146800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:155145000-155146000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:155145000-155146400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:155145000-155146400	Weak transcription	Thymus	Thymus
5	chr3:155145200-155146400	Weak transcription	NHEK	skin
6	chr3:155145200-155148200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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