Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155108548..155110604-chr3:155127196..155130080,2	MCF-7	breast:
2	chr3:155125953..155128553-chr3:155134009..155136555,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11925808	0.83[AFR][1000 genomes]
rs28503947	0.81[AFR][1000 genomes]
rs36052772	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4302412	0.97[AFR][1000 genomes]
rs4352413	0.96[AFR][1000 genomes]
rs4392458	0.98[AFR][1000 genomes]
rs4630983	0.81[AFR][1000 genomes]
rs57517191	1.00[EUR][1000 genomes]
rs58252841	1.00[EUR][1000 genomes]
rs60701022	1.00[EUR][1000 genomes]
rs6440980	1.00[EUR][1000 genomes]
rs6440981	1.00[EUR][1000 genomes]
rs6440982	0.90[YRI][hapmap];0.98[AFR][1000 genomes]
rs6440983	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs6440984	0.81[AFR][1000 genomes]
rs6772219	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6777732	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs6786372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791188	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6791222	0.83[AFR][1000 genomes]
rs6802130	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs6805227	0.98[AFR][1000 genomes]
rs73009744	1.00[EUR][1000 genomes]
rs73873183	1.00[EUR][1000 genomes]
rs7637223	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs7639284	0.90[YRI][hapmap]
rs9681845	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155125800-155134200	Weak transcription	Osteobl	bone
2	chr3:155127000-155127600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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