Variant report
| Variant | rs73009744 |
|---|---|
| Chromosome Location | chr3:155120399-155120400 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AC104472.1-3 | chr3:155120204-155120807 | NONHSAT092834 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs28582368 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs36052772 | 1.00[EUR][1000 genomes] |
| rs57517191 | 1.00[EUR][1000 genomes] |
| rs58252841 | 1.00[EUR][1000 genomes] |
| rs60701022 | 1.00[EUR][1000 genomes] |
| rs61588883 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6440980 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6440981 | 0.99[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6772219 | 1.00[EUR][1000 genomes] |
| rs6782818 | 1.00[EUR][1000 genomes] |
| rs6786372 | 1.00[EUR][1000 genomes] |
| rs6789445 | 1.00[EUR][1000 genomes] |
| rs73873183 | 1.00[EUR][1000 genomes] |
| rs9681845 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999994 | chr3:154579254-155175303 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv532664 | chr3:154588346-155162615 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv1000753 | chr3:154848433-155207022 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 4 | nsv536773 | chr3:154848433-155207022 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155119400-155121400 | Enhancers | Muscle Satellite Cultured Cells | -- |
