Variant report

Variant	rs6773734
Chromosome Location	chr3:141195790-141195791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141184151..141186428-chr3:141194623..141197205,2	MCF-7	breast:
2	chr3:141172749..141175132-chr3:141195060..141197634,2	K562	blood:
3	chr3:141195751..141196398-chr3:141205766..141206336,2	MCF-7	breast:
4	chr3:141194536..141196661-chr3:141202566..141205649,3	K562	blood:
5	chr3:141194843..141196913-chr3:141204230..141207024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

rs_ID	r²[population]
rs1366042	0.97[ASN][1000 genomes]
rs1582875	0.99[ASN][1000 genomes]
rs2042864	0.95[ASN][1000 genomes]
rs7612543	0.84[ASN][1000 genomes]
rs7632308	0.99[ASN][1000 genomes]
rs9289631	0.95[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs6773734	ZBTB38	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141184600-141201000	Weak transcription	NHLF	lung
2	chr3:141190400-141195800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:141190400-141195800	Weak transcription	Osteobl	bone
4	chr3:141190600-141195800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:141190600-141195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:141190800-141195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:141190800-141195800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141190800-141195800	Weak transcription	NHDF-Ad	bronchial
9	chr3:141193000-141196200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:141193200-141196600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:141193200-141197600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:141193200-141198400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:141193600-141197600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:141193800-141195800	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:141193800-141196400	Enhancers	Primary T cells from cord blood	blood
16	chr3:141194000-141196200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:141194000-141196600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:141194200-141196600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:141194400-141196000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:141194400-141196200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr3:141195000-141195800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:141195000-141196000	Enhancers	Dnd41	blood
23	chr3:141195400-141195800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:141195400-141196400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:141195400-141196600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr3:141195400-141196800	Enhancers	HMEC	breast
27	chr3:141195400-141204200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:141195600-141196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:141195600-141196000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:141195600-141203600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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