Variant report

Variant	rs7632308
Chromosome Location	chr3:141196260-141196261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141184151..141186428-chr3:141194623..141197205,2	MCF-7	breast:
2	chr3:141172749..141175132-chr3:141195060..141197634,2	K562	blood:
3	chr3:141195751..141196398-chr3:141205766..141206336,2	MCF-7	breast:
4	chr3:141194536..141196661-chr3:141202566..141205649,3	K562	blood:
5	chr3:141194843..141196913-chr3:141204230..141207024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11711375	0.92[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes]
rs11916906	0.82[EUR][1000 genomes]
rs11917587	0.89[CEU][hapmap]
rs13069717	0.92[EUR][1000 genomes]
rs1366042	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1493209	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1582875	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863867	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2042864	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2312193	0.92[CEU][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs295320	1.00[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs295323	0.92[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs35711802	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3806646	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3821710	1.00[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs3821712	1.00[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6440013	0.81[EUR][1000 genomes]
rs6763498	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6767158	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6773734	0.99[ASN][1000 genomes]
rs6776003	0.89[CEU][hapmap]
rs6785874	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6795168	1.00[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6800122	0.92[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6808837	1.00[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs7612543	0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs7643837	0.92[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9289630	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9289631	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9813177	0.92[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9851256	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9878347	0.86[YRI][hapmap]
rs9879503	0.86[YRI][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7632308	GK5	cis	parietal	SCAN
rs7632308	ZBTB38	cis	cerebellum	SCAN
rs7632308	RASA2	Cis_1M	lymphoblastoid	RTeQTL
rs7632308	ATP1B3	cis	cerebellum	SCAN
rs7632308	RASA2	cis	parietal	SCAN
rs7632308	RASA2	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141184600-141201000	Weak transcription	NHLF	lung
2	chr3:141193200-141196600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:141193200-141197600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:141193200-141198400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:141193600-141197600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr3:141193800-141196400	Enhancers	Primary T cells from cord blood	blood
7	chr3:141194000-141196600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:141194200-141196600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:141195400-141196400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:141195400-141196600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:141195400-141196800	Enhancers	HMEC	breast
12	chr3:141195400-141204200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:141195600-141203600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:141195800-141196400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:141195800-141196400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:141195800-141196400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr3:141195800-141196400	Enhancers	Hela-S3	cervix
18	chr3:141195800-141196600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:141195800-141196600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:141195800-141196600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:141195800-141196600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:141195800-141196600	Enhancers	HUVEC	blood vessel
23	chr3:141195800-141196600	Enhancers	K562	blood
24	chr3:141195800-141196600	Enhancers	NHDF-Ad	bronchial
25	chr3:141195800-141196600	Enhancers	Osteobl	bone
26	chr3:141195800-141196800	Enhancers	NHEK	skin
27	chr3:141195800-141197000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:141195800-141197000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:141196000-141196600	Enhancers	NH-A	brain
30	chr3:141196200-141196400	Enhancers	A549	lung
31	chr3:141196200-141201200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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