Variant report

Variant	rs6763498
Chromosome Location	chr3:141218568-141218569
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141218042..141219616-chr3:141230840..141232406,2	K562	blood:
2	chr3:141217233..141220189-chr3:141223393..141226923,6	K562	blood:
3	chr3:141215787..141218632-chr3:141221462..141225084,3	K562	blood:
4	chr3:141217049..141220342-chr3:141227507..141230156,3	K562	blood:
5	chr3:141214596..141217091-chr3:141218047..141220301,2	K562	blood:
6	chr3:141216419..141218648-chr3:141218821..141221433,4	K562	blood:
7	chr3:141217331..141219301-chr3:141222092..141224227,2	MCF-7	breast:
8	chr3:141217065..141219629-chr3:141222334..141224305,2	MCF-7	breast:
9	chr3:141173524..141175043-chr3:141217283..141220078,2	MCF-7	breast:

No data

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11711375	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11916906	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11917587	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062809	0.82[EUR][1000 genomes]
rs13069717	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366042	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1493209	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1582875	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1863867	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2042864	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2172471	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2312193	0.86[EUR][1000 genomes]
rs2639998	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs295320	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs295323	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35711802	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3806646	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3821710	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3821712	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6440013	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440015	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6767158	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776003	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6785874	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795168	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800122	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6808837	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632308	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7643837	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289631	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9813177	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6763498	RASA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141207000-141235800	Weak transcription	Gastric	stomach
2	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
3	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
5	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:141208400-141231200	Weak transcription	Fetal Lung	lung
7	chr3:141208400-141232600	Weak transcription	NH-A	brain
8	chr3:141209600-141232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:141209800-141234200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:141210000-141221000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:141210200-141224200	Weak transcription	K562	blood
12	chr3:141210400-141248000	Weak transcription	NHLF	lung
13	chr3:141211000-141229400	Weak transcription	NHDF-Ad	bronchial
14	chr3:141211200-141220000	Weak transcription	HepG2	liver
15	chr3:141211400-141235400	Weak transcription	A549	lung
16	chr3:141211600-141220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:141215000-141221000	Weak transcription	HSMM	muscle
18	chr3:141215000-141221600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:141216000-141239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:141217000-141218800	Flanking Active TSS	Dnd41	blood
21	chr3:141217000-141219000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr3:141217200-141219000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr3:141217200-141219000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr3:141217200-141219200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr3:141217200-141219200	Enhancers	Small Intestine	intestine
26	chr3:141217200-141220400	Enhancers	Primary B cells from peripheral blood	blood
27	chr3:141217200-141220400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr3:141217200-141232000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:141217400-141218600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr3:141217400-141218800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:141217400-141218800	Enhancers	Left Ventricle	heart
32	chr3:141217400-141219000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr3:141217400-141219200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:141217400-141219600	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr3:141217600-141220000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:141217800-141218600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:141217800-141221000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:141217800-141221000	Weak transcription	Right Ventricle	heart
39	chr3:141217800-141223400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:141217800-141226400	Weak transcription	Pancreas	Pancrea
41	chr3:141217800-141229000	Weak transcription	Fetal Heart	heart
42	chr3:141217800-141229400	Weak transcription	Osteobl	bone
43	chr3:141217800-141235800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:141217800-141258400	Weak transcription	Psoas Muscle	Psoas
45	chr3:141218000-141218600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:141218000-141218800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:141218000-141219000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:141218000-141219000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr3:141218000-141219000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr3:141218000-141219200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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