Variant report

Variant	rs9813177
Chromosome Location	chr3:141212518-141212519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141212359..141214375-chr3:141215681..141218041,2	K562	blood:
2	chr3:141210886..141212597-chr3:141257894..141259814,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11711375	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11916906	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11917587	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13062809	0.82[EUR][1000 genomes]
rs13069717	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366042	1.00[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1493209	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582875	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1863867	0.95[YRI][hapmap];0.85[ASN][1000 genomes]
rs2042864	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2172471	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2312193	0.92[CEU][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639998	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs295320	1.00[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs295323	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35711802	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806646	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3821710	1.00[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3821712	1.00[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6440013	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440015	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6763498	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6767158	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776003	0.89[CEU][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6785874	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795168	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6800122	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808837	1.00[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612543	0.81[JPT][hapmap];0.82[TSI][hapmap]
rs7632308	0.92[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7643837	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289631	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9850416	0.82[TSI][hapmap]
rs9851256	0.87[CEU][hapmap]
rs9878347	0.91[YRI][hapmap]
rs9879503	0.91[YRI][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9813177	ZBTB38	cis	cerebellum	SCAN
rs9813177	RASA2	cis	cerebellum	SCAN
rs9813177	RASA2	Cis_1M	lymphoblastoid	RTeQTL
rs9813177	GK5	cis	parietal	SCAN
rs9813177	ATP1B3	cis	cerebellum	SCAN
rs9813177	RASA2	cis	parietal	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141206800-141217400	Weak transcription	Spleen	Spleen
2	chr3:141207000-141216600	Weak transcription	Small Intestine	intestine
3	chr3:141207000-141217400	Weak transcription	Left Ventricle	heart
4	chr3:141207000-141235800	Weak transcription	Gastric	stomach
5	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
6	chr3:141207200-141217400	Weak transcription	Psoas Muscle	Psoas
7	chr3:141207400-141213000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:141207400-141215000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:141207400-141217200	Weak transcription	Fetal Heart	heart
10	chr3:141207400-141217400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:141207400-141217600	Weak transcription	Colonic Mucosa	Colon
12	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:141207800-141217400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:141208000-141212800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:141208000-141217400	Weak transcription	NHEK	skin
18	chr3:141208200-141213000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:141208200-141214800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:141208400-141214600	Weak transcription	HSMM	muscle
21	chr3:141208400-141215000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:141208400-141217600	Weak transcription	HMEC	breast
23	chr3:141208400-141231200	Weak transcription	Fetal Lung	lung
24	chr3:141208400-141232600	Weak transcription	NH-A	brain
25	chr3:141208600-141215000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr3:141208600-141217000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr3:141208800-141215000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:141209200-141213000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr3:141209200-141216400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:141209200-141217000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:141209600-141213800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:141209600-141232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:141209800-141217400	Weak transcription	Fetal Thymus	thymus
34	chr3:141209800-141234200	Weak transcription	Fetal Muscle Leg	muscle
35	chr3:141210000-141221000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:141210200-141214600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:141210200-141214600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:141210200-141215000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr3:141210200-141216800	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:141210200-141218000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:141210200-141224200	Weak transcription	K562	blood
42	chr3:141210400-141213200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:141210400-141213600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr3:141210400-141214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:141210400-141217000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:141210400-141217200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:141210400-141217200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:141210400-141217600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:141210400-141248000	Weak transcription	NHLF	lung
50	chr3:141210600-141217400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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