Variant report

Variant	rs6795168
Chromosome Location	chr3:141213581-141213582
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141213246..141215216-chr3:141222160..141223841,2	K562	blood:
2	chr3:141212359..141214375-chr3:141215681..141218041,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11711375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11916906	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11917587	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062809	0.82[EUR][1000 genomes]
rs13069717	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366042	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1493209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1582875	0.96[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16851435	0.89[JPT][hapmap]
rs16851438	0.94[JPT][hapmap]
rs16851441	0.89[JPT][hapmap]
rs16851483	0.88[JPT][hapmap]
rs1863867	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs2035935	0.88[JPT][hapmap]
rs2035936	0.82[JPT][hapmap]
rs2042864	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2172471	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2312193	0.92[CEU][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2639997	0.88[JPT][hapmap]
rs2639998	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2640017	0.88[JPT][hapmap]
rs295299	0.88[JPT][hapmap]
rs295300	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs295320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs295323	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35711802	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3732869	0.89[JPT][hapmap]
rs3806646	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3821709	0.88[JPT][hapmap]
rs3821710	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3821712	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683610	0.88[JPT][hapmap]
rs6440013	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440015	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6763498	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776003	0.86[CEU][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6785874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6808837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7627807	0.88[JPT][hapmap]
rs7632308	1.00[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7643837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289631	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9813177	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9851256	0.88[CEU][hapmap]
rs9878347	0.94[JPT][hapmap];0.91[YRI][hapmap]
rs9879503	0.94[JPT][hapmap];0.91[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6795168	RASA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141206800-141217400	Weak transcription	Spleen	Spleen
2	chr3:141207000-141216600	Weak transcription	Small Intestine	intestine
3	chr3:141207000-141217400	Weak transcription	Left Ventricle	heart
4	chr3:141207000-141235800	Weak transcription	Gastric	stomach
5	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
6	chr3:141207200-141217400	Weak transcription	Psoas Muscle	Psoas
7	chr3:141207400-141215000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:141207400-141217200	Weak transcription	Fetal Heart	heart
9	chr3:141207400-141217400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:141207400-141217600	Weak transcription	Colonic Mucosa	Colon
11	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:141207800-141217400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:141208000-141217400	Weak transcription	NHEK	skin
16	chr3:141208200-141214800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:141208400-141214600	Weak transcription	HSMM	muscle
18	chr3:141208400-141215000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:141208400-141217600	Weak transcription	HMEC	breast
20	chr3:141208400-141231200	Weak transcription	Fetal Lung	lung
21	chr3:141208400-141232600	Weak transcription	NH-A	brain
22	chr3:141208600-141215000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:141208600-141217000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr3:141208800-141215000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr3:141209200-141216400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:141209200-141217000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr3:141209600-141213800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:141209600-141232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:141209800-141217400	Weak transcription	Fetal Thymus	thymus
30	chr3:141209800-141234200	Weak transcription	Fetal Muscle Leg	muscle
31	chr3:141210000-141221000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:141210200-141214600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:141210200-141214600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:141210200-141215000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr3:141210200-141216800	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:141210200-141218000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:141210200-141224200	Weak transcription	K562	blood
38	chr3:141210400-141213600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:141210400-141214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:141210400-141217000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:141210400-141217200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:141210400-141217200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr3:141210400-141217600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:141210400-141248000	Weak transcription	NHLF	lung
45	chr3:141210600-141217400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:141211000-141229400	Weak transcription	NHDF-Ad	bronchial
47	chr3:141211200-141215000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:141211200-141220000	Weak transcription	HepG2	liver
49	chr3:141211400-141215000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr3:141211400-141235400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links